Literature DB >> 27496324

Natural search algorithms as a bridge between organisms, evolution, and ecology.

Andrew M Hein1, Francesco Carrara2, Douglas R Brumley2, Roman Stocker2, Simon A Levin3.   

Abstract

The ability to navigate is a hallmark of living systems, from single cells to higher animals. Searching for targets, such as food or mates in particular, is one of the fundamental navigational tasks many organisms must execute to survive and reproduce. Here, we argue that a recent surge of studies of the proximate mechanisms that underlie search behavior offers a new opportunity to integrate the biophysics and neuroscience of sensory systems with ecological and evolutionary processes, closing a feedback loop that promises exciting new avenues of scientific exploration at the frontier of systems biology.

Entities:  

Keywords:  encounter rates; evolutionary strategy; exploration–exploitation; navigation; sensing

Mesh:

Substances:

Year:  2016        PMID: 27496324      PMCID: PMC5003253          DOI: 10.1073/pnas.1606195113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  78 in total

1.  Noninvasive inference of the molecular chemotactic response using bacterial trajectories.

Authors:  Jean-Baptiste Masson; Guillaume Voisinne; Jerome Wong-Ng; Antonio Celani; Massimo Vergassola
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  Social interactions, information use, and the evolution of collective migration.

Authors:  Vishwesha Guttal; Iain D Couzin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

Review 3.  Growth cone chemotaxis.

Authors:  Duncan Mortimer; Thomas Fothergill; Zac Pujic; Linda J Richards; Geoffrey J Goodhill
Journal:  Trends Neurosci       Date:  2008-01-16       Impact factor: 13.837

4.  Pheromone responsiveness threshold depends on temporal integration by antennal lobe projection neurons.

Authors:  Masashi Tabuchi; Takeshi Sakurai; Hidefumi Mitsuno; Shigehiro Namiki; Ryo Minegishi; Takahiro Shiotsuki; Keiro Uchino; Hideki Sezutsu; Toshiki Tamura; Stephan Shuichi Haupt; Kei Nakatani; Ryohei Kanzaki
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-04       Impact factor: 11.205

5.  Bacterial strategies for chemotaxis response.

Authors:  Antonio Celani; Massimo Vergassola
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

6.  Protease helps yeast find mating partners.

Authors:  N Barkai; M D Rose; N S Wingreen
Journal:  Nature       Date:  1998-12-03       Impact factor: 49.962

7.  The population dynamics of bacteria in physically structured habitats and the adaptive virtue of random motility.

Authors:  Yan Wei; Xiaolin Wang; Jingfang Liu; Ilya Nememan; Amoolya H Singh; Howie Weiss; Bruce R Levin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-15       Impact factor: 11.205

8.  Succession of hide-seek and pursuit-evasion at heterogeneous locations.

Authors:  Shmuel Gal; Jérôme Casas
Journal:  J R Soc Interface       Date:  2014-03-12       Impact factor: 4.118

9.  Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations.

Authors:  Yutaka Yawata; Otto X Cordero; Filippo Menolascina; Jan-Hendrik Hehemann; Martin F Polz; Roman Stocker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-01       Impact factor: 11.205

10.  Response rescaling in bacterial chemotaxis.

Authors:  Milena D Lazova; Tanvir Ahmed; Domenico Bellomo; Roman Stocker; Thomas S Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-01       Impact factor: 11.205

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  12 in total

1.  Information limitation and the dynamics of coupled ecological systems.

Authors:  Andrew M Hein; Benjamin T Martin
Journal:  Nat Ecol Evol       Date:  2019-10-28       Impact factor: 15.460

2.  Reverse-engineering ecological theory from data.

Authors:  Benjamin T Martin; Stephan B Munch; Andrew M Hein
Journal:  Proc Biol Sci       Date:  2018-05-16       Impact factor: 5.349

3.  Bacteria push the limits of chemotactic precision to navigate dynamic chemical gradients.

Authors:  Douglas R Brumley; Francesco Carrara; Andrew M Hein; Yutaka Yawata; Simon A Levin; Roman Stocker
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-16       Impact factor: 11.205

4.  Correlated decision making across multiple phases of olfactory-guided search in Drosophila improves search efficiency.

Authors:  Floris van Breugel
Journal:  J Exp Biol       Date:  2021-08-20       Impact factor: 3.308

Review 5.  The ecological roles of bacterial chemotaxis.

Authors:  Johannes M Keegstra; Francesco Carrara; Roman Stocker
Journal:  Nat Rev Microbiol       Date:  2022-03-15       Impact factor: 78.297

6.  Tuning movement for sensing in an uncertain world.

Authors:  Chen Chen; Todd D Murphey; Malcolm A MacIver
Journal:  Elife       Date:  2020-09-22       Impact factor: 8.140

7.  Adaptive switch to sexually dimorphic movements by partner-seeking termites.

Authors:  Nobuaki Mizumoto; Shigeto Dobata
Journal:  Sci Adv       Date:  2019-06-19       Impact factor: 14.136

8.  Chemotaxis as a navigation strategy to boost range expansion.

Authors:  Jonas Cremer; Tomoya Honda; Ying Tang; Jerome Wong-Ng; Massimo Vergassola; Terence Hwa
Journal:  Nature       Date:  2019-11-06       Impact factor: 49.962

9.  Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing.

Authors:  Steffen Lange; Benjamin M Friedrich
Journal:  PLoS Comput Biol       Date:  2021-04-12       Impact factor: 4.475

10.  Flow-mediated olfactory communication in honeybee swarms.

Authors:  Dieu My T Nguyen; Michael L Iuzzolino; Aaron Mankel; Katarzyna Bozek; Greg J Stephens; Orit Peleg
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-30       Impact factor: 11.205

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