Literature DB >> 20867338

Limits of sensing temporal concentration changes by single cells.

Thierry Mora1, Ned S Wingreen.   

Abstract

Berg and Purcell [Biophys. J. 20, 193 (1977)] calculated how the accuracy of concentration sensing by single-celled organisms is limited by noise from the small number of counted molecules. Here we generalize their results to the sensing of concentration ramps, which is often the biologically relevant situation (e.g., during bacterial chemotaxis). We calculate lower bounds on the uncertainty of ramp sensing by three measurement devices: a single receptor, an absorbing sphere, and a monitoring sphere. We contrast two strategies, simple linear regression of the input signal versus maximum likelihood estimation, and show that the latter can be twice as accurate as the former. Finally, we consider biological implementations of these two strategies, and identify possible signatures that maximum likelihood estimation is implemented by real biological systems.

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Year:  2010        PMID: 20867338     DOI: 10.1103/PhysRevLett.104.248101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  23 in total

1.  Physical limits on bacterial navigation in dynamic environments.

Authors:  Andrew M Hein; Douglas R Brumley; Francesco Carrara; Roman Stocker; Simon A Levin
Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

2.  How receptor diffusion influences gradient sensing.

Authors:  H Nguyen; P Dayan; G J Goodhill
Journal:  J R Soc Interface       Date:  2015-01-06       Impact factor: 4.118

3.  Chemodetection in fluctuating environments: receptor coupling, buffering, and antagonism.

Authors:  Jean-Benoît Lalanne; Paul François
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

4.  Optimal resource allocation in cellular sensing systems.

Authors:  Christopher C Govern; Pieter Rein Ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

5.  Energetic costs of cellular computation.

Authors:  Pankaj Mehta; David J Schwab
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

6.  The Berg-Purcell limit revisited.

Authors:  Kazunari Kaizu; Wiet de Ronde; Joris Paijmans; Koichi Takahashi; Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

7.  How input noise limits biochemical sensing in ultrasensitive systems.

Authors:  Bo Hu; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-09-05

8.  Noise filtering strategies in adaptive biochemical signaling networks: Application to E. coli chemotaxis.

Authors:  Pablo Sartori; Yuhai Tu
Journal:  J Stat Phys       Date:  2011-04-01       Impact factor: 1.548

9.  A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute.

Authors:  Jonathan Desponds; Massimo Vergassola; Aleksandra M Walczak
Journal:  Elife       Date:  2020-07-29       Impact factor: 8.140

10.  Biophysical clocks face a trade-off between internal and external noise resistance.

Authors:  Weerapat Pittayakanchit; Zhiyue Lu; Justin Chew; Michael J Rust; Arvind Murugan
Journal:  Elife       Date:  2018-07-10       Impact factor: 8.140

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