Literature DB >> 26760213

Divergent clonal selection dominates medulloblastoma at recurrence.

A Sorana Morrissy1,2, Livia Garzia1,2, David J H Shih1,2,3, Scott Zuyderduyn4, Xi Huang1, Patryk Skowron1,2,3, Marc Remke5, Florence M G Cavalli1,2, Vijay Ramaswamy1,2,3,6, Patricia E Lindsay7,8, Salomeh Jelveh8, Laura K Donovan1,2, Xin Wang1,2,3, Betty Luu1,2, Kory Zayne1,2, Yisu Li9, Chelsea Mayoh9, Nina Thiessen9, Eloi Mercier9, Karen L Mungall9, Yusanne Ma9, Kane Tse9, Thomas Zeng9, Karey Shumansky10, Andrew J L Roth10, Sohrab Shah10, Hamza Farooq1,2, Noriyuki Kijima1,2, Borja L Holgado1,2, John J Y Lee1,2,3, Stuart Matan-Lithwick1,2, Jessica Liu1,2, Stephen C Mack1,2,11, Alex Manno1,2, K A Michealraj1,2, Carolina Nor1,2, John Peacock1,2,3, Lei Qin1,2, Juri Reimand2,4, Adi Rolider1,2, Yuan Y Thompson1,2,3, Xiaochong Wu1,2, Trevor Pugh12, Adrian Ally9, Mikhail Bilenky9, Yaron S N Butterfield9, Rebecca Carlsen9, Young Cheng9, Eric Chuah9, Richard D Corbett9, Noreen Dhalla9, An He9, Darlene Lee9, Haiyan I Li9, William Long9, Michael Mayo9, Patrick Plettner9, Jenny Q Qian9, Jacqueline E Schein9, Angela Tam9, Tina Wong9, Inanc Birol9,13,14, Yongjun Zhao9, Claudia C Faria15, José Pimentel16, Sofia Nunes17, Tarek Shalaby18, Michael Grotzer18, Ian F Pollack19, Ronald L Hamilton20, Xiao-Nan Li21, Anne E Bendel22, Daniel W Fults23, Andrew W Walter24, Toshihiro Kumabe25, Teiji Tominaga26, V Peter Collins27, Yoon-Jae Cho28, Caitlin Hoffman6, David Lyden29, Jeffrey H Wisoff30, James H Garvin31, Duncan S Stearns32, Luca Massimi33, Ulrich Schüller34, Jaroslav Sterba35, Karel Zitterbart35, Stephanie Puget36, Olivier Ayrault37, Sandra E Dunn38, Daniela P C Tirapelli39, Carlos G Carlotti39, Helen Wheeler40, Andrew R Hallahan41,42, Wendy Ingram41,43, Tobey J MacDonald44, Jeffrey J Olson45, Erwin G Van Meir46, Ji-Yeoun Lee47, Kyu-Chang Wang47, Seung-Ki Kim47, Byung-Kyu Cho47, Torsten Pietsch48, Gudrun Fleischhack49, Stephan Tippelt49, Young Shin Ra50, Simon Bailey51, Janet C Lindsey51, Steven C Clifford51, Charles G Eberhart52, Michael K Cooper53, Roger J Packer54, Maura Massimino55, Maria Luisa Garre56, Ute Bartels57, Uri Tabori2,57, Cynthia E Hawkins2,58, Peter Dirks2,6, Eric Bouffet2,57, James T Rutka2,3,6, Robert J Wechsler-Reya59, William A Weiss60, Lara S Collier61, Adam J Dupuy62, Andrey Korshunov63, David T W Jones64, Marcel Kool64, Paul A Northcott64, Stefan M Pfister64,65, David A Largaespada66, Andrew J Mungall9, Richard A Moore9, Nada Jabado67, Gary D Bader4,68, Steven J M Jones9,13,69, David Malkin57,70, Marco A Marra9,13, Michael D Taylor1,2,3,6.   

Abstract

The development of targeted anti-cancer therapies through the study of cancer genomes is intended to increase survival rates and decrease treatment-related toxicity. We treated a transposon-driven, functional genomic mouse model of medulloblastoma with 'humanized' in vivo therapy (microneurosurgical tumour resection followed by multi-fractionated, image-guided radiotherapy). Genetic events in recurrent murine medulloblastoma exhibit a very poor overlap with those in matched murine diagnostic samples (<5%). Whole-genome sequencing of 33 pairs of human diagnostic and post-therapy medulloblastomas demonstrated substantial genetic divergence of the dominant clone after therapy (<12% diagnostic events were retained at recurrence). In both mice and humans, the dominant clone at recurrence arose through clonal selection of a pre-existing minor clone present at diagnosis. Targeted therapy is unlikely to be effective in the absence of the target, therefore our results offer a simple, proximal, and remediable explanation for the failure of prior clinical trials of targeted therapy.

Entities:  

Mesh:

Year:  2016        PMID: 26760213      PMCID: PMC4936195          DOI: 10.1038/nature16478

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  59 in total

1.  Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome.

Authors:  Yoon-Jae Cho; Aviad Tsherniak; Pablo Tamayo; Sandro Santagata; Azra Ligon; Heidi Greulich; Rameen Berhoukim; Vladimir Amani; Liliana Goumnerova; Charles G Eberhart; Ching C Lau; James M Olson; Richard J Gilbertson; Amar Gajjar; Olivier Delattre; Marcel Kool; Keith Ligon; Matthew Meyerson; Jill P Mesirov; Scott L Pomeroy
Journal:  J Clin Oncol       Date:  2010-11-22       Impact factor: 44.544

2.  Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing.

Authors:  Volker Hovestadt; David T W Jones; Simone Picelli; Wei Wang; Marcel Kool; Paul A Northcott; Marc Sultan; Katharina Stachurski; Marina Ryzhova; Hans-Jörg Warnatz; Meryem Ralser; Sonja Brun; Jens Bunt; Natalie Jäger; Kortine Kleinheinz; Serap Erkek; Ursula D Weber; Cynthia C Bartholomae; Christof von Kalle; Chris Lawerenz; Jürgen Eils; Jan Koster; Rogier Versteeg; Till Milde; Olaf Witt; Sabine Schmidt; Stephan Wolf; Torsten Pietsch; Stefan Rutkowski; Wolfram Scheurlen; Michael D Taylor; Benedikt Brors; Jörg Felsberg; Guido Reifenberger; Arndt Borkhardt; Hans Lehrach; Robert J Wechsler-Reya; Roland Eils; Marie-Laure Yaspo; Pablo Landgraf; Andrey Korshunov; Marc Zapatka; Bernhard Radlwimmer; Stefan M Pfister; Peter Lichter
Journal:  Nature       Date:  2014-05-18       Impact factor: 49.962

3.  Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse.

Authors:  Lara S Collier; Corey M Carlson; Shruthi Ravimohan; Adam J Dupuy; David A Largaespada
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

4.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

Authors:  Peter Eirew; Adi Steif; Jaswinder Khattra; Gavin Ha; Damian Yap; Hossein Farahani; Karen Gelmon; Stephen Chia; Colin Mar; Adrian Wan; Emma Laks; Justina Biele; Karey Shumansky; Jamie Rosner; Andrew McPherson; Cydney Nielsen; Andrew J L Roth; Calvin Lefebvre; Ali Bashashati; Camila de Souza; Celia Siu; Radhouane Aniba; Jazmine Brimhall; Arusha Oloumi; Tomo Osako; Alejandra Bruna; Jose L Sandoval; Teresa Algara; Wendy Greenwood; Kaston Leung; Hongwei Cheng; Hui Xue; Yuzhuo Wang; Dong Lin; Andrew J Mungall; Richard Moore; Yongjun Zhao; Julie Lorette; Long Nguyen; David Huntsman; Connie J Eaves; Carl Hansen; Marco A Marra; Carlos Caldas; Sohrab P Shah; Samuel Aparicio
Journal:  Nature       Date:  2014-11-26       Impact factor: 49.962

6.  Impact of craniospinal dose, boost volume, and neurologic complications on intellectual outcome in patients with medulloblastoma.

Authors:  Iska Moxon-Emre; Eric Bouffet; Michael D Taylor; Normand Laperriere; Nadia Scantlebury; Nicole Law; Brenda J Spiegler; David Malkin; Laura Janzen; Donald Mabbott
Journal:  J Clin Oncol       Date:  2014-02-10       Impact factor: 44.544

7.  Cancer prevention strategies that address the evolutionary dynamics of neoplastic cells: simulating benign cell boosters and selection for chemosensitivity.

Authors:  Carlo C Maley; Brian J Reid; Stephanie Forrest
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2004-08       Impact factor: 4.254

8.  EMu: probabilistic inference of mutational processes and their localization in the cancer genome.

Authors:  Andrej Fischer; Christopher J R Illingworth; Peter J Campbell; Ville Mustonen
Journal:  Genome Biol       Date:  2013-04-29       Impact factor: 13.583

9.  Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.

Authors:  Valentina Boeva; Tatiana Popova; Kevin Bleakley; Pierre Chiche; Julie Cappo; Gudrun Schleiermacher; Isabelle Janoueix-Lerosey; Olivier Delattre; Emmanuel Barillot
Journal:  Bioinformatics       Date:  2011-12-06       Impact factor: 6.937

10.  ShatterProof: operational detection and quantification of chromothripsis.

Authors:  Shaylan K Govind; Amin Zia; Pablo H Hennings-Yeomans; John D Watson; Michael Fraser; Catalina Anghel; Alexander W Wyatt; Theodorus van der Kwast; Colin C Collins; John D McPherson; Robert G Bristow; Paul C Boutros
Journal:  BMC Bioinformatics       Date:  2014-03-19       Impact factor: 3.169

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  125 in total

1.  Genetics: Divergence shapes recurrence.

Authors:  Diana Romero
Journal:  Nat Rev Clin Oncol       Date:  2016-02-02       Impact factor: 66.675

Review 2.  Updates on Management of Adult Medulloblastoma.

Authors:  Nazanin Majd; Marta Penas-Prado
Journal:  Curr Treat Options Oncol       Date:  2019-06-24

Review 3.  The evolution of tumour phylogenetics: principles and practice.

Authors:  Russell Schwartz; Alejandro A Schäffer
Journal:  Nat Rev Genet       Date:  2017-02-13       Impact factor: 53.242

Review 4.  In vivo functional screening for systems-level integrative cancer genomics.

Authors:  Julia Weber; Christian J Braun; Dieter Saur; Roland Rad
Journal:  Nat Rev Cancer       Date:  2020-07-07       Impact factor: 60.716

Review 5.  Developmental origins and oncogenic pathways in malignant brain tumors.

Authors:  Q Richard Lu; Lily Qian; Xianyao Zhou
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2019-04-03       Impact factor: 5.814

Review 6.  Regulation of CTNNB1 signaling in gastric cancer and stem cells.

Authors:  Shihori Tanabe; Kazuhiko Aoyagi; Hiroshi Yokozaki; Hiroki Sasaki
Journal:  World J Gastrointest Oncol       Date:  2016-08-15

Review 7.  Genomic Instability in Cancer: Teetering on the Limit of Tolerance.

Authors:  Noemi Andor; Carlo C Maley; Hanlee P Ji
Journal:  Cancer Res       Date:  2017-04-21       Impact factor: 12.701

8.  Integrating Mathematical Modeling with High-Throughput Imaging Explains How Polyploid Populations Behave in Nutrient-Sparse Environments.

Authors:  Gregory J Kimmel; Mark Dane; Laura M Heiser; Philipp M Altrock; Noemi Andor
Journal:  Cancer Res       Date:  2020-09-16       Impact factor: 12.701

Review 9.  Misactivation of Hedgehog signaling causes inherited and sporadic cancers.

Authors:  David R Raleigh; Jeremy F Reiter
Journal:  J Clin Invest       Date:  2019-02-01       Impact factor: 14.808

10.  Radiation-Drug Combinations to Improve Clinical Outcomes and Reduce Normal Tissue Toxicities: Current Challenges and New Approaches: Report of the Symposium Held at the 63rd Annual Meeting of the Radiation Research Society, 15-18 October 2017; Cancun, Mexico.

Authors:  Kelly C Falls; Ricky A Sharma; Yaacov R Lawrence; Richard A Amos; Sunil J Advani; Mansoor M Ahmed; Bhadrasain Vikram; C Norman Coleman; Pataje G Prasanna
Journal:  Radiat Res       Date:  2018-10       Impact factor: 2.841

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