Literature DB >> 26753032

Biotechnology by Design: An Introductory Level, Project-Based, Synthetic Biology Laboratory Program for Undergraduate Students.

Dale L Beach1, Consuelo J Alvarez1.   

Abstract

Synthetic biology offers an ideal opportunity to promote undergraduate laboratory courses with research-style projects, immersing students in an inquiry-based program that enhances the experience of the scientific process. We designed a semester-long, project-based laboratory curriculum using synthetic biology principles to develop a novel sensory device. Students develop subject matter knowledge of molecular genetics and practical skills relevant to molecular biology, recombinant DNA techniques, and information literacy. During the spring semesters of 2014 and 2015, the Synthetic Biology Laboratory Project was delivered to sophomore genetics courses. Using a cloning strategy based on standardized BioBrick genetic "parts," students construct a "reporter plasmid" expressing a reporter gene (GFP) controlled by a hybrid promoter regulated by the lac-repressor protein (lacI). In combination with a "sensor plasmid," the production of the reporter phenotype is inhibited in the presence of a target environmental agent, arabinose. When arabinose is absent, constitutive GFP expression makes cells glow green. But the presence of arabinose activates a second promoter (pBAD) to produce a lac-repressor protein that will inhibit GFP production. Student learning was assessed relative to five learning objectives, using a student survey administered at the beginning (pre-survey) and end (post-survey) of the course, and an additional 15 open-ended questions from five graded Progress Report assignments collected throughout the course. Students demonstrated significant learning gains (p < 0.05) for all learning outcomes. Ninety percent of students indicated that the Synthetic Biology Laboratory Project enhanced their understanding of molecular genetics. The laboratory project is highly adaptable for both introductory and advanced courses.

Entities:  

Year:  2015        PMID: 26753032      PMCID: PMC4690566          DOI: 10.1128/jmbe.v16i2.971

Source DB:  PubMed          Journal:  J Microbiol Biol Educ        ISSN: 1935-7877


  19 in total

1.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Refinement and standardization of synthetic biological parts and devices.

Authors:  Barry Canton; Anna Labno; Drew Endy
Journal:  Nat Biotechnol       Date:  2008-07       Impact factor: 54.908

Review 3.  DNA assembly for synthetic biology: from parts to pathways and beyond.

Authors:  Tom Ellis; Tom Adie; Geoff S Baldwin
Journal:  Integr Biol (Camb)       Date:  2011-01-19       Impact factor: 2.192

4.  Using a molecular-genetic approach to investigate bacterial physiology in a continuous, research-based, semester-long laboratory for undergraduates.

Authors:  Jeremiah Foster Ault; Betsey Marie Renfro; Andrea Kirsten White
Journal:  J Microbiol Biol Educ       Date:  2011-12-01

5.  Construction of biologically functional bacterial plasmids in vitro.

Authors:  S N Cohen; A C Chang; H W Boyer; R B Helling
Journal:  Proc Natl Acad Sci U S A       Date:  1973-11       Impact factor: 11.205

Review 6.  Synthetic biology--putting engineering into biology.

Authors:  Matthias Heinemann; Sven Panke
Journal:  Bioinformatics       Date:  2006-09-05       Impact factor: 6.937

7.  Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements.

Authors:  R Lutz; H Bujard
Journal:  Nucleic Acids Res       Date:  1997-03-15       Impact factor: 16.971

8.  Production of the antimalarial drug precursor artemisinic acid in engineered yeast.

Authors:  Dae-Kyun Ro; Eric M Paradise; Mario Ouellet; Karl J Fisher; Karyn L Newman; John M Ndungu; Kimberly A Ho; Rachel A Eachus; Timothy S Ham; James Kirby; Michelle C Y Chang; Sydnor T Withers; Yoichiro Shiba; Richmond Sarpong; Jay D Keasling
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

9.  Implementation of a project-based molecular biology laboratory emphasizing protein structure-function relationships in a large introductory biology laboratory course.

Authors:  Daniel J Treacy; Saumya M Sankaran; Susannah Gordon-Messer; Danielle Saly; Rebecca Miller; Stefan R Isaac; Melissa S Kosinski-Collins
Journal:  CBE Life Sci Educ       Date:  2011       Impact factor: 3.325

Review 10.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

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  1 in total

Review 1.  Transfer: A Review for Biology and the Life Sciences.

Authors:  Althea N Kaminske; Carolina E Kuepper-Tetzel; Cynthia L Nebel; Megan A Sumeracki; Sean P Ryan
Journal:  CBE Life Sci Educ       Date:  2020-09       Impact factor: 3.325

  1 in total

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