Literature DB >> 26748787

Identification and Optimization of Anthranilic Acid Based Inhibitors of Replication Protein A.

James D Patrone1,2, Nicholas F Pelz1, Brittney S Bates1, Elaine M Souza-Fagundes1, Bhavatarini Vangamudi1, Demarco V Camper1, Alexey G Kuznetsov1, Carrie F Browning1, Michael D Feldkamp1, Andreas O Frank1, Benjamin A Gilston1, Edward T Olejniczak1, Olivia W Rossanese1, Alex G Waterson3,4, Walter J Chazin1,4, Stephen W Fesik5,6,7.   

Abstract

Replication protein A (RPA) is an essential single-stranded DNA (ssDNA)-binding protein that initiates the DNA damage response pathway through protein-protein interactions (PPIs) mediated by its 70N domain. The identification and use of chemical probes that can specifically disrupt these interactions is important for validating RPA as a cancer target. A high-throughput screen (HTS) to identify new chemical entities was conducted, and 90 hit compounds were identified. From these initial hits, an anthranilic acid based series was optimized by using a structure-guided iterative medicinal chemistry approach to yield a cell-penetrant compound that binds to RPA70N with an affinity of 812 nm. This compound, 2-(3- (N-(3,4-dichlorophenyl)sulfamoyl)-4-methylbenzamido)benzoic acid (20 c), is capable of inhibiting PPIs mediated by this domain.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  high-throughput screening; hit optimization; medicinal chemistry; protein-protein interactions; replication protein A

Mesh:

Substances:

Year:  2016        PMID: 26748787      PMCID: PMC4838552          DOI: 10.1002/cmdc.201500479

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  23 in total

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Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 2.  ATR: an essential regulator of genome integrity.

Authors:  Karlene A Cimprich; David Cortez
Journal:  Nat Rev Mol Cell Biol       Date:  2008-07-02       Impact factor: 94.444

3.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

4.  Targeted inhibition of Replication Protein A reveals cytotoxic activity, synergy with chemotherapeutic DNA-damaging agents, and insight into cellular function.

Authors:  Sarah C Shuck; John J Turchi
Journal:  Cancer Res       Date:  2010-04-15       Impact factor: 12.701

5.  ATR and ATRIP: partners in checkpoint signaling.

Authors:  D Cortez; S Guntuku; J Qin; S J Elledge
Journal:  Science       Date:  2001-11-23       Impact factor: 47.728

6.  Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A.

Authors:  Elena Bochkareva; Lilia Kaustov; Ayeda Ayed; Gwan-Su Yi; Ying Lu; Antonio Pineda-Lucena; Jack C C Liao; Andrei L Okorokov; Jo Milner; Cheryl H Arrowsmith; Alexey Bochkarev
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-17       Impact factor: 11.205

7.  Development of a high-throughput screen for inhibitors of replication protein A and its role in nucleotide excision repair.

Authors:  Brooke J Andrews; John J Turchi
Journal:  Mol Cancer Ther       Date:  2004-04       Impact factor: 6.261

8.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

9.  The basic cleft of RPA70N binds multiple checkpoint proteins, including RAD9, to regulate ATR signaling.

Authors:  Xin Xu; Sivaraja Vaithiyalingam; Gloria G Glick; Daniel A Mordes; Walter J Chazin; David Cortez
Journal:  Mol Cell Biol       Date:  2008-10-20       Impact factor: 4.272

Review 10.  A dynamic model for replication protein A (RPA) function in DNA processing pathways.

Authors:  Ellen Fanning; Vitaly Klimovich; Andrew R Nager
Journal:  Nucleic Acids Res       Date:  2006-08-25       Impact factor: 16.971

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  3 in total

1.  Structure-Guided Optimization of Replication Protein A (RPA)-DNA Interaction Inhibitors.

Authors:  Navnath S Gavande; Pamela S VanderVere-Carozza; Katherine S Pawelczak; Tyler L Vernon; Matthew R Jordan; John J Turchi
Journal:  ACS Med Chem Lett       Date:  2020-01-02       Impact factor: 4.345

2.  Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities.

Authors:  Davide Moiani; Daryl A Ronato; Chris A Brosey; Andrew S Arvai; Aleem Syed; Jean-Yves Masson; Elena Petricci; John A Tainer
Journal:  Methods Enzymol       Date:  2018-02-22       Impact factor: 1.600

Review 3.  Recent advancements in the discovery of protein-protein interaction inhibitors of replication protein A.

Authors:  James D Patrone; Alex G Waterson; Stephen W Fesik
Journal:  Medchemcomm       Date:  2016-11-04       Impact factor: 3.597

  3 in total

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