Literature DB >> 10531511

Data processing.

M G Rossmann1, C G van Beek.   

Abstract

X-ray diffraction data processing proceeds through indexing, pre-refinement of camera parameters and crystal orientation, intensity integration, post-refinement and scaling. The DENZO program has set new standards for autoindexing, but no publication has appeared which describes the algorithm. In the development of the new Data Processing Suite (DPS), one of the first aims has been the development of an autoindexing procedure at least as powerful as that used by DENZO. The resultant algorithm will be described. Another major problem which has arisen in recent years is scaling and post-refinement of data from different images when there are few, if any, full reflections. This occurs when the mosaic spread approaches or exceeds the angle of oscillation, as is usually the case for frozen crystals. A procedure which is able to obtain satisfactory results for such a situation will be described.

Mesh:

Substances:

Year:  1999        PMID: 10531511     DOI: 10.1107/s0907444999008379

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  47 in total

1.  Crystal structure of d(GCGAAAGCT) containing a parallel-stranded duplex with homo base pairs and an anti-parallel duplex with Watson-Crick base pairs.

Authors:  Tomoko Sunami; Jiro Kondo; Tomonori Kobuna; Ichiro Hirao; Kimitsuna Watanabe; Kin-ichiro Miura; Akio Takénaka
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  Structural insights into the recognition mechanism between an antitumor galectin AAL and the Thomsen-Friedenreich antigen.

Authors:  Lei Feng; Hui Sun; Ying Zhang; De-Feng Li; Da-Cheng Wang
Journal:  FASEB J       Date:  2010-06-07       Impact factor: 5.191

3.  Structural basis of adhesion-molecule recognition by ERM proteins revealed by the crystal structure of the radixin-ICAM-2 complex.

Authors:  Keisuke Hamada; Toshiyuki Shimizu; Shigenobu Yonemura; Shoichiro Tsukita; Sachiko Tsukita; Toshio Hakoshima
Journal:  EMBO J       Date:  2003-02-03       Impact factor: 11.598

4.  Structure of HoxA9 and Pbx1 bound to DNA: Hox hexapeptide and DNA recognition anterior to posterior.

Authors:  Nicole A LaRonde-LeBlanc; Cynthia Wolberger
Journal:  Genes Dev       Date:  2003-08-15       Impact factor: 11.361

5.  Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats.

Authors:  Jiro Kondo; Wataru Adachi; Shun-ichi Umeda; Tomoko Sunami; Akio Takénaka
Journal:  Nucleic Acids Res       Date:  2004-05-07       Impact factor: 16.971

6.  Progress in protein crystallography.

Authors:  Zbigniew Dauter; Alexander Wlodawer
Journal:  Protein Pept Lett       Date:  2016       Impact factor: 1.890

7.  Automatic lattice determination for two-dimensional crystal images.

Authors:  Xiangyan Zeng; Bryant Gipson; Zi Yan Zheng; Ludovic Renault; Henning Stahlberg
Journal:  J Struct Biol       Date:  2007-08-24       Impact factor: 2.867

8.  Evidence for liquid water during the high-density to low-density amorphous ice transition.

Authors:  Chae Un Kim; Buz Barstow; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-03       Impact factor: 11.205

9.  Crystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-A resolution: a large conformational change in ADP-dependent glucokinase.

Authors:  Hideaki Tsuge; Haruhiko Sakuraba; Toru Kobe; Akira Kujime; Nobuhiko Katunuma; Toshihisa Ohshima
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

10.  Structural basis for recognition of 2',5'-linked oligoadenylates by human ribonuclease L.

Authors:  Nobutada Tanaka; Masayuki Nakanishi; Yoshio Kusakabe; Yoshikuni Goto; Yukio Kitade; Kazuo T Nakamura
Journal:  EMBO J       Date:  2004-09-23       Impact factor: 11.598

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.