| Literature DB >> 26727612 |
Tanja Knaus1, Caroline E Paul2, Colin W Levy1, Simon de Vries2, Francesco G Mutti1, Frank Hollmann2, Nigel S Scrutton1.
Abstract
The search for affordable, green biocatalytic processes is a challenge for chemicals manufacture. Redox biotransformations are potentially attractive, but they rely on unstable and expensive nicotinamide coenzymes that have prevented their widespread exploitation. Stoichiometric use of natural coenzymes is not viable economically, and the instability of these molecules hinders catalytic processes that employ coenzyme recycling. Here, we investigate the efficiency of man-made synthetic biomimetics of the natural coenzymes NAD(P)H in redox biocatalysis. Extensive studies with a range of oxidoreductases belonging to the "ene" reductase family show that these biomimetics are excellent analogues of the natural coenzymes, revealed also in crystal structures of the ene reductase XenA with selected biomimetics. In selected cases, these biomimetics outperform the natural coenzymes. "Better-than-Nature" biomimetics should find widespread application in fine and specialty chemicals production by harnessing the power of high stereo-, regio-, and chemoselective redox biocatalysts and enabling reactions under mild conditions at low cost.Entities:
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Year: 2016 PMID: 26727612 PMCID: PMC4731831 DOI: 10.1021/jacs.5b12252
Source DB: PubMed Journal: J Am Chem Soc ISSN: 0002-7863 Impact factor: 15.419
Figure 1(A) Structure of NAD(P)H and synthetic nicotinamide biomimetic mNADHs (1–5) and (B) the catalytic cycle of ER-catalyzed reactions.
Figure 2Superimposition showing the highly conserved nature of ligand and biomimetic binding. Structures cocrystallized in the presence of NADPH4 and biomimetic compounds 1b, 2b, and 3b are shown, superimposed based upon secondary structure elements using SSM (Coot).[38] Residues Trp302, His181, and His178 are shown in stick representation colored with white carbon atoms and blue nitrogen atoms. These residues correspond to the NADPH4-bound structure. The ordered portion of the NADPH4 is shown as semitransparent spheres in all-atom color (carbon, purple; oxygen, red; phosphorus, orange) with its associated underlying FMN cofactor shown as gray spheres. Three biomimetic compounds are shown in stick representation with their respective Trp302 residues colored to match the biomimetic. 1b, cyan; 2b, yellow; and 3b, magenta. Dual occupancies are present for residue Trp302 for each of the three mimics, indicating that occupancy is less than 100% for these compounds.
Kinetic Parameters for the Reductive Half-Reaction of ERs with Natural and Biomimetic Coenzymesa
| PETNR | TOYE | XenA | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| coenzyme | ||||||||||||
| NADPH | 31 ± 0.2 | 202 ± 5 | 153 | 57 ± 0.5 | 5 ± 0.7 | 11 400 | 67 ± 2 | 27 ± 2 | 2481 | 47 ± 0.5 | 9 ± 0.6 | 5222 |
| NADH | 3 ± 0.1 | 1457 ± 12 | 2 | 4 ± 1 | 21 ± 0.5 | 191 | 3 ± 0.1 | 112 ± 6 | 27 | 1.3 ± 0.01 | 8 ± 0.7 | 163 |
| 19 ± 0.3 | 95 ± 4 | 200 | 236 ± 4 | 560 ± 18 | 421 | 68 ± 1 | <25 | >2720 | 121 ± 2 | 227 ± 5 | 533 | |
| 120 ± 6 | 184 ± 15 | 652 | 386 ± 3 | 644 ± 9 | 600 | 388 ± 7 | 8 ± 1 | 48 500 | 147 ± 1 | 406 ± 12 | 362 | |
| 17 ± 8 | 1625 ± 95 | 11 | 321 ± 25 | 2672 ± 150 | 120 | 117 ± 2 | 16 ± 1 | 7313 | 158 ± 3 | 917 ± 25 | 172 | |
| 25 ± 1 | 1040 ± 67 | 24 | 770 ± 49 | 188 ± 23 | 4096 | > 550 | ≫70 | > 500 | ≫50 | |||
| n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | 0.08 ± 0.001 | 41 ± 3 | 2 | n.d. | n.d. | n.d. | |
kred, reaction rates [s–1]; KD, dissociation constants [μM]; n.d., not determined due to poor conversion in biocatalytic reactions. Values obtained are an average of 5–6 shots. Reaction conditions: [ER] = 8–10 μM, buffer 50 mM MOPS (pH 7.0) + 5 mM CaCl2, at 30 °C, under anaerobic conditions with constant N2 flow, [coenzyme] = varied.
Not possible to measure at lower concentrations of the coenzyme due to non-pseudo-first-order conditions.
Rate of reduction occurs within the dead time of the stopped-flow instrument at higher concentrations of coenzyme.
Steady-State Kinetics for ERs with 2-Cyclohexen-1-one and Varied Concentrations of NAD(P)H and mNADHsa
| PETNR | TOYE | XenA | |||||||
|---|---|---|---|---|---|---|---|---|---|
| coenzyme | |||||||||
| NADPH | 8 ± 0.1 | 164 ± 7 | 49 | 15 ± 1 | 5 ± 1 | 3000 | 9 ± 0.3 | 13 ± 1.1 | 692 |
| NADH | >1.2 | >2500 | 3 ± 0.1 | 38 ± 3 | 79 | 2 ± 0.1 | 356 ± 17 | 6 | |
| 5 ± 0.1 | 71 ± 5 | 70 | 23 ± 0.8 | 352 ± 40 | 65 | 13 ± 0.2 | <7 | >1857 | |
| 11 ± 0.3 | 43 ± 3 | 256 | 21 ± 0.8 | 221 ± 25 | 95 | 21 ± 0.5 | 2 ± 0.5 | 10 500 | |
| 10 ± 0.6 | 2035 ± 226 | 5 | 26 ± 3 | 1010 ± 174 | 26 | 13 ± 0.2 | 8 ± 0.3 | 1625 | |
Reaction conditions: buffer 50 mM MOPS (pH 7.0) + 5 mM CaCl2, at 30 °C, under anaerobic conditions with constant N2 flow. [coenzyme] = varied, [ER] = 100–250 nM; ε(mNADHs), see the Supporting Information.
[2-Cyclohexen-1-one] = 5.5 mM.
[2-Cyclohexen-1-one] = 35 mM.
[2-Cyclohexen-1-one] = 1.5 mM.
Conversions [%] of 6 Reduced to (R)-6a by Various ERs with Different Coenzymesa
| coenzyme | PETNR | TOYE | OYE2 | OYE3 | XenA | XenB | LeOPR1 | NerA | MR | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NADH | 93 | 56 | 92 | 83 | 91 | 93 | 95 | 89 | 81 | 92 | 53 | 63 |
| NADH | 28 | >99 | >99 | 62 | 99 | >99 | >99 | >99 | >99 | n.d. | n.d. | n.d. |
| NADPH | 93 | 50 | 59 | 58 | 88 | 96 | 90 | 86 | 34 | >99 | 64 | 45 |
| NADPH | >99 | >99 | >99 | 79 | >99 | >99 | >99 | >99 | >99 | n.d. | n.d. | n.d. |
| 1 | 92 | 90 | 42 | 11 | 74 | 91 | 85 | 84 | 26 | >99 | >99 | >99 |
| 2 | 70 | 59 | 25 | 10 | 63 | 75 | 66 | 67 | 29 | >99 | 98 | 74 |
| 3 | 98 | 70 | 11 | 2 | 75 | 71 | 92 | 87 | 20 | >99 | >99 | 38 |
| 4 | 50 | 61 | 23 | 11 | 64 | 25 | 52 | 36 | 6 | >99 | >99 | >99 |
| 5 | 2 | 10 | 1 | 1 | 80 | 1 | 3 | 2 | 4 | 59 | 9 | 43 |
Reaction conditions: [6] = 10 mM, [ER] = 3.0–5.0 μM, [coenzyme] = 11 mM (unless otherwise specified), MOPS buffer (50 mM, pH 7.0, 5 mM CaCl2), inert atmosphere, 30 °C, 4 h; the mNADHs were directly added as solids. Conversion was determined by GC.
GDH/glucose recycling system used.
n.d., not determined.
Figure 3(A) Investigated recycling system of mNADHs with TsOYE and the rhodium complex [Cp*Rh(bpy)(H2O)]2+. The nicotinamide coenzyme mimic mNAD+ is reduced by [Cp*Rh(bpy)(H2O)]2+. Reaction conditions: [6] = 10 mM, [ER] = 3.0 μM, [oxidized coenzyme 1a] = 1 mM, [NaHCO2] = 60 mM, [Rh complex] = 0.25 mM, MOPS buffer (50 mM, pH 7.0, 5 mM CaCl2), inert atmosphere, 50 °C, 4 h; the mNADHs were directly added as solids. Conversion was determined by GC. (B) Proposed mechanism for the reduction of NAD(P)+ by [Cp*Rh(bpy)(H2O)]2+.[51] The table shows that 66% conversion could be obtained after 4 h reaction time.