Literature DB >> 26719414

Nonnative SOD1 trimer is toxic to motor neurons in a model of amyotrophic lateral sclerosis.

Elizabeth A Proctor1, Lanette Fee2, Yazhong Tao2, Rachel L Redler2, James M Fay2, Yuliang Zhang3, Zhengjian Lv3, Ian P Mercer2, Mohanish Deshmukh4, Yuri L Lyubchenko3, Nikolay V Dokholyan5.   

Abstract

Since the linking of mutations in the Cu,Zn superoxide dismutase gene (sod1) to amyotrophic lateral sclerosis (ALS) in 1993, researchers have sought the connection between SOD1 and motor neuron death. Disease-linked mutations tend to destabilize the native dimeric structure of SOD1, and plaques containing misfolded and aggregated SOD1 have been found in the motor neurons of patients with ALS. Despite advances in understanding of ALS disease progression and SOD1 folding and stability, cytotoxic species and mechanisms remain unknown, greatly impeding the search for and design of therapeutic interventions. Here, we definitively link cytotoxicity associated with SOD1 aggregation in ALS to a nonnative trimeric SOD1 species. We develop methodology for the incorporation of low-resolution experimental data into simulations toward the structural modeling of metastable, multidomain aggregation intermediates. We apply this methodology to derive the structure of a SOD1 trimer, which we validate in vitro and in hybridized motor neurons. We show that SOD1 mutants designed to promote trimerization increase cell death. Further, we demonstrate that the cytotoxicity of the designed mutants correlates with trimer stability, providing a direct link between the presence of misfolded oligomers and neuron death. Identification of cytotoxic species is the first and critical step in elucidating the molecular etiology of ALS, and the ability to manipulate formation of these species will provide an avenue for the development of future therapeutic strategies.

Entities:  

Keywords:  ALS; neurodegeneration; protein aggregation; protein misfolding; structural modeling

Mesh:

Substances:

Year:  2015        PMID: 26719414      PMCID: PMC4725519          DOI: 10.1073/pnas.1516725113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  The rate and equilibrium constants for a multistep reaction sequence for the aggregation of superoxide dismutase in amyotrophic lateral sclerosis.

Authors:  Sagar D Khare; Michael Caplow; Nikolay V Dokholyan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-08       Impact factor: 11.205

2.  Dynamics of nucleosomes assessed with time-lapse high-speed atomic force microscopy.

Authors:  Atsushi Miyagi; Toshio Ando; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2011-08-23       Impact factor: 3.162

3.  Prognosis in familial amyotrophic lateral sclerosis: progression and survival in patients with glu100gly and ala4val mutations in Cu,Zn superoxide dismutase.

Authors:  T Juneja; M A Pericak-Vance; N G Laing; S Dave; T Siddique
Journal:  Neurology       Date:  1997-01       Impact factor: 9.910

4.  Misfolded mutant SOD1 directly inhibits VDAC1 conductance in a mouse model of inherited ALS.

Authors:  Adrian Israelson; Nir Arbel; Sandrine Da Cruz; Hristelina Ilieva; Koji Yamanaka; Varda Shoshan-Barmatz; Don W Cleveland
Journal:  Neuron       Date:  2010-08-26       Impact factor: 17.173

5.  Amyotrophic lateral sclerosis and structural defects in Cu,Zn superoxide dismutase.

Authors:  H X Deng; A Hentati; J A Tainer; Z Iqbal; A Cayabyab; W Y Hung; E D Getzoff; P Hu; B Herzfeldt; R P Roos
Journal:  Science       Date:  1993-08-20       Impact factor: 47.728

6.  Ab initio folding of proteins with all-atom discrete molecular dynamics.

Authors:  Feng Ding; Douglas Tsao; Huifen Nie; Nikolay V Dokholyan
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

7.  Minute quantities of misfolded mutant superoxide dismutase-1 cause amyotrophic lateral sclerosis.

Authors:  P Andreas Jonsson; Karin Ernhill; Peter M Andersen; Daniel Bergemalm; Thomas Brännström; Ole Gredal; Peter Nilsson; Stefan L Marklund
Journal:  Brain       Date:  2003-10-08       Impact factor: 13.501

Review 8.  Current hypotheses for the underlying biology of amyotrophic lateral sclerosis.

Authors:  Jeffrey D Rothstein
Journal:  Ann Neurol       Date:  2009-01       Impact factor: 10.422

Review 9.  SOD1 and TDP-43 animal models of amyotrophic lateral sclerosis: recent advances in understanding disease toward the development of clinical treatments.

Authors:  Peter I Joyce; Pietro Fratta; Elizabeth M C Fisher; Abraham Acevedo-Arozena
Journal:  Mamm Genome       Date:  2011-06-26       Impact factor: 2.957

10.  SOD1 and amyotrophic lateral sclerosis: mutations and oligomerization.

Authors:  Lucia Banci; Ivano Bertini; Mirela Boca; Stefania Girotto; Manuele Martinelli; Joan Selverstone Valentine; Miguela Vieru
Journal:  PLoS One       Date:  2008-02-27       Impact factor: 3.240

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  33 in total

1.  Pericytes Extend Survival of ALS SOD1 Mice and Induce the Expression of Antioxidant Enzymes in the Murine Model and in IPSCs Derived Neuronal Cells from an ALS Patient.

Authors:  Giuliana Castello Coatti; Miriam Frangini; Marcos C Valadares; Juliana Plat Gomes; Natalia O Lima; Natale Cavaçana; Amanda F Assoni; Mayra V Pelatti; Alexander Birbrair; Antonio Carlos Pedroso de Lima; Julio M Singer; Francisco Marcelo M Rocha; Giovani Loiola Da Silva; Mario Sergio Mantovani; Lucia Inês Macedo-Souza; Merari F R Ferrari; Mayana Zatz
Journal:  Stem Cell Rev Rep       Date:  2017-10       Impact factor: 5.739

2.  Network mapping of the conformational heterogeneity of SOD1 by deploying statistical cluster analysis of FTIR spectra.

Authors:  Sourav Chowdhury; Sagnik Sen; Amrita Banerjee; Vladimir N Uversky; Ujjwal Maulik; Krishnananda Chattopadhyay
Journal:  Cell Mol Life Sci       Date:  2019-04-22       Impact factor: 9.261

3.  A misfolded dimer of Cu/Zn-superoxide dismutase leading to pathological oligomerization in amyotrophic lateral sclerosis.

Authors:  Itsuki Anzai; Eiichi Tokuda; Atsushi Mukaiyama; Shuji Akiyama; Fumito Endo; Koji Yamanaka; Hidemi Misawa; Yoshiaki Furukawa
Journal:  Protein Sci       Date:  2017-02-12       Impact factor: 6.725

4.  Large SOD1 aggregates, unlike trimeric SOD1, do not impact cell viability in a model of amyotrophic lateral sclerosis.

Authors:  Cheng Zhu; Matthew V Beck; Jack D Griffith; Mohanish Deshmukh; Nikolay V Dokholyan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

5.  Nanoscale Dynamics of Amyloid β-42 Oligomers As Revealed by High-Speed Atomic Force Microscopy.

Authors:  Siddhartha Banerjee; Zhiqiang Sun; Eric Y Hayden; David B Teplow; Yuri L Lyubchenko
Journal:  ACS Nano       Date:  2017-11-29       Impact factor: 15.881

Review 6.  Experimentally-driven protein structure modeling.

Authors:  Nikolay V Dokholyan
Journal:  J Proteomics       Date:  2020-04-05       Impact factor: 4.044

7.  High-speed atomic force microscopy reveals structural dynamics of α-synuclein monomers and dimers.

Authors:  Yuliang Zhang; Mohtadin Hashemi; Zhengjian Lv; Benfeard Williams; Konstantin I Popov; Nikolay V Dokholyan; Yuri L Lyubchenko
Journal:  J Chem Phys       Date:  2018-03-28       Impact factor: 3.488

8.  A Phosphomimetic Mutation Stabilizes SOD1 and Rescues Cell Viability in the Context of an ALS-Associated Mutation.

Authors:  James M Fay; Cheng Zhu; Elizabeth A Proctor; Yazhong Tao; Wenjun Cui; Hengming Ke; Nikolay V Dokholyan
Journal:  Structure       Date:  2016-09-22       Impact factor: 5.006

Review 9.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

Review 10.  Single-molecule microscopy for in-cell quantification of protein oligomeric stoichiometry.

Authors:  Huanhuan Chen; Xihong Xie; Tai-Yen Chen
Journal:  Curr Opin Struct Biol       Date:  2020-11-23       Impact factor: 6.809

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