Literature DB >> 26713397

The complete chloroplast genome sequence of Acer morrisonense (Aceraceae).

Zhong-Hu Li1, Yu-Shan Xie1, Tao Zhou1, Yun Jia1, Yan-Ling He1, Jiao Yang1.   

Abstract

Acer morrisonense (Aceraceae) is an important forest tree species and is endemic to Taiwan area. In this study, we determined the complete nucleotide sequence of A. morrisonense chloroplast genome (cpDNA) by using next-generation sequencing. The cpDNA was 157 197 bp in size, contained a pair of 26 728 bp inverted repeat (IR) regions, which were separated by a large single copy region (LSC) and a small single copy (SSC) region of 85 655 and 18 086 bp, respectively. The cpDNA contained 134 genes, including 86 protein-coding genes (78 PCG species), 8 ribosomal RNA genes (four rRNA species), and 40 transfer RNA genes (31 tRNA species). The most of gene species occur as a single copy, while 21 gene species occur in double copies. The overall AT content of A. morrisonense chloroplast genome were 62.2%, while the corresponding values of the LSC, SSC, and IR regions were 64.0%, 67.9%, and 57.3%, respectively. The phylogenetic analysis suggested that the cpDNA of A. morrisonense is closely related to that of congeneric A. buergerianum subsp. ningpoense.

Entities:  

Keywords:  Acer morrisonense; chloroplast genome; illumina sequencing

Mesh:

Substances:

Year:  2015        PMID: 26713397     DOI: 10.3109/19401736.2015.1118091

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  8 in total

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2.  Unraveling the Chloroplast Genomes of Two Prosopis Species to Identify Its Genomic Information, Comparative Analyses and Phylogenetic Relationship.

Authors:  Sajjad Asaf; Abdul Latif Khan; Arif Khan; Ahmed Al-Harrasi
Journal:  Int J Mol Sci       Date:  2020-05-06       Impact factor: 5.923

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4.  Development and Application of Genomic Resources in an Endangered Palaeoendemic Tree, Parrotia subaequalis (Hamamelidaceae) From Eastern China.

Authors:  Yun-Yan Zhang; En Shi; Zhao-Ping Yang; Qi-Fang Geng; Ying-Xiong Qiu; Zhong-Sheng Wang
Journal:  Front Plant Sci       Date:  2018-03-01       Impact factor: 5.753

5.  Complete plastome sequencing from Toona (Meliaceae) and phylogenomic analyses within Sapindales.

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6.  Characterization of the Chloroplast Genome Sequence of Acer miaotaiense: Comparative and Phylogenetic Analyses.

Authors:  Jiantao Zhao; Yao Xu; Linjie Xi; Junwei Yang; Hongwu Chen; Jing Zhang
Journal:  Molecules       Date:  2018-07-17       Impact factor: 4.411

7.  Characterization of the Complete Chloroplast Genome of Acer truncatum Bunge (Sapindales: Aceraceae): A New Woody Oil Tree Species Producing Nervonic Acid.

Authors:  Qiuyue Ma; Yanan Wang; Lu Zhu; Changwei Bi; Shuxian Li; Shushun Li; Jing Wen; Kunyuan Yan; Qianzhong Li
Journal:  Biomed Res Int       Date:  2019-11-24       Impact factor: 3.411

8.  Insights Into Comparative Analyses and Phylogenomic Implications of Acer (Sapindaceae) Inferred From Complete Chloroplast Genomes.

Authors:  Tao Yu; Jian Gao; Pei-Chun Liao; Jun-Qing Li; Wen-Bao Ma
Journal:  Front Genet       Date:  2022-01-03       Impact factor: 4.599

  8 in total

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