Literature DB >> 26707200

New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy.

Lewis E Kay1.   

Abstract

In the past several decades solution NMR spectroscopy has emerged as a powerful technique for the study of the structure and dynamics of proteins, providing detailed insights into biomolecular function. Herein, I provide a summary of two important areas of application, focusing on NMR studies of (i) supramolecular systems with aggregate molecular masses in the hundreds of kilodaltons and of (ii) sparsely populated and transiently formed protein states that are thermally accessible from populated ground-state conformers. The critical role of molecular dynamics in function is emphasized, highlighting the utility of the NMR technique in providing such often elusive information.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Keywords:  conformational studies; functional dynamics; proteasome; solution NMR spectroscopy

Mesh:

Substances:

Year:  2015        PMID: 26707200     DOI: 10.1016/j.jmb.2015.11.028

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  45 in total

1.  NMR probing of invisible excited states using selectively labeled RNAs.

Authors:  Regan M LeBlanc; Andrew P Longhini; Vitali Tugarinov; T Kwaku Dayie
Journal:  J Biomol NMR       Date:  2018-06-01       Impact factor: 2.835

Review 2.  Nucleosome structure and dynamics are coming of age.

Authors:  Keda Zhou; Guillaume Gaullier; Karolin Luger
Journal:  Nat Struct Mol Biol       Date:  2018-12-10       Impact factor: 15.369

3.  Probing the excited-state chemical shifts and exchange parameters by nitrogen-decoupled amide proton chemical exchange saturation transfer (HNdec-CEST).

Authors:  Qinglin Wu; Benjamin A Fenton; Jessica L Wojtaszek; Pei Zhou
Journal:  Chem Commun (Camb)       Date:  2017-07-27       Impact factor: 6.222

4.  Coarse-grain simulations on NMR conformational ensembles highlight functional residues in proteins.

Authors:  Sophie Sacquin-Mora
Journal:  J R Soc Interface       Date:  2019-07-10       Impact factor: 4.118

5.  The case for defined protein folding pathways.

Authors:  S Walter Englander; Leland Mayne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

Review 6.  Conformational Sub-states and Populations in Enzyme Catalysis.

Authors:  P K Agarwal; N Doucet; C Chennubhotla; A Ramanathan; C Narayanan
Journal:  Methods Enzymol       Date:  2016-07-09       Impact factor: 1.600

Review 7.  Applications of NMR and computational methodologies to study protein dynamics.

Authors:  Chitra Narayanan; Khushboo Bafna; Louise D Roux; Pratul K Agarwal; Nicolas Doucet
Journal:  Arch Biochem Biophys       Date:  2017-05-05       Impact factor: 4.013

8.  Optimization of Conformational Dynamics in an Epistatic Evolutionary Trajectory.

Authors:  Mariano M González; Luciano A Abriata; Pablo E Tomatis; Alejandro J Vila
Journal:  Mol Biol Evol       Date:  2016-03-15       Impact factor: 16.240

9.  Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2.

Authors:  Kalyan S Chakrabarti; Jess Li; Ranabir Das; R Andrew Byrd
Journal:  Structure       Date:  2017-04-20       Impact factor: 5.006

Review 10.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

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