Literature DB >> 26700805

SMN and symmetric arginine dimethylation of RNA polymerase II C-terminal domain control termination.

Dorothy Yanling Zhao1,2,3, Gerald Gish2, Ulrich Braunschweig1, Yue Li1,4, Zuyao Ni1, Frank W Schmitges1, Guoqing Zhong1, Ke Liu5, Weiguo Li5, Jason Moffat1,3, Masoud Vedadi5, Jinrong Min5, Tony J Pawson2,3, Benjamin J Blencowe1,3, Jack F Greenblatt1,3.   

Abstract

The carboxy-terminal domain (CTD) of the RNA polymerase II (RNAP II) subunit POLR2A is a platform for modifications specifying the recruitment of factors that regulate transcription, mRNA processing, and chromatin remodelling. Here we show that a CTD arginine residue (R1810 in human) that is conserved across vertebrates is symmetrically dimethylated (me2s). This R1810me2s modification requires protein arginine methyltransferase 5 (PRMT5) and recruits the Tudor domain of the survival of motor neuron (SMN, also known as GEMIN1) protein, which is mutated in spinal muscular atrophy. SMN interacts with senataxin, which is sometimes mutated in ataxia oculomotor apraxia type 2 and amyotrophic lateral sclerosis. Because POLR2A R1810me2s and SMN, like senataxin, are required for resolving RNA-DNA hybrids created by RNA polymerase II that form R-loops in transcription termination regions, we propose that R1810me2s, SMN, and senataxin are components of an R-loop resolution pathway. Defects in this pathway can influence transcription termination and may contribute to neurodegenerative disorders.

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Year:  2015        PMID: 26700805     DOI: 10.1038/nature16469

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  56 in total

1.  The FCP1 phosphatase interacts with RNA polymerase II and with MEP50 a component of the methylosome complex involved in the assembly of snRNP.

Authors:  Paolo Licciardo; Stefano Amente; Luca Ruggiero; Maria Monti; Piero Pucci; Luigi Lania; Barbara Majello
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

2.  Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes.

Authors:  Sharmistha Pal; Sheethal N Vishwanath; Hediye Erdjument-Bromage; Paul Tempst; Saïd Sif
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

3.  DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.

Authors:  Manuel J Muñoz; M Soledad Pérez Santangelo; Maria P Paronetto; Manuel de la Mata; Federico Pelisch; Stéphanie Boireau; Kira Glover-Cutter; Claudia Ben-Dov; Matías Blaustein; Juan J Lozano; Gregory Bird; David Bentley; Edouard Bertrand; Alberto R Kornblihtt
Journal:  Cell       Date:  2009-05-15       Impact factor: 41.582

4.  Characterization of monoclonal antibody to DNA.RNA and its application to immunodetection of hybrids.

Authors:  S J Boguslawski; D E Smith; M A Michalak; K E Mickelson; C O Yehle; W L Patterson; R J Carrico
Journal:  J Immunol Methods       Date:  1986-05-01       Impact factor: 2.303

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

Review 6.  Progression through the RNA polymerase II CTD cycle.

Authors:  Stephen Buratowski
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

7.  A proteomic analysis of arginine-methylated protein complexes.

Authors:  François-Michel Boisvert; Jocelyn Côté; Marie-Chloé Boulanger; Stéphane Richard
Journal:  Mol Cell Proteomics       Date:  2003-10-07       Impact factor: 5.911

Review 8.  Protein arginine methylation in mammals: who, what, and why.

Authors:  Mark T Bedford; Steven G Clarke
Journal:  Mol Cell       Date:  2009-01-16       Impact factor: 17.970

9.  The C-terminal domain of RNA polymerase II is modified by site-specific methylation.

Authors:  Robert J Sims; Luis Alejandro Rojas; David B Beck; Roberto Bonasio; Roland Schüller; William J Drury; Dirk Eick; Danny Reinberg
Journal:  Science       Date:  2011-04-01       Impact factor: 47.728

10.  PRMT9 is a type II methyltransferase that methylates the splicing factor SAP145.

Authors:  Yanzhong Yang; Andrea Hadjikyriacou; Zheng Xia; Sitaram Gayatri; Daehoon Kim; Cecilia Zurita-Lopez; Ryan Kelly; Ailan Guo; Wei Li; Steven G Clarke; Mark T Bedford
Journal:  Nat Commun       Date:  2015-03-04       Impact factor: 14.919

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  87 in total

Review 1.  Characteristics of circular RNAs generated by human Survival Motor Neuron genes.

Authors:  Eric W Ottesen; Ravindra N Singh
Journal:  Cell Signal       Date:  2020-06-15       Impact factor: 4.315

Review 2.  Epigenetics in amyotrophic lateral sclerosis: a role for histone post-translational modifications in neurodegenerative disease.

Authors:  Seth A Bennett; Royena Tanaz; Samantha N Cobos; Mariana P Torrente
Journal:  Transl Res       Date:  2018-10-12       Impact factor: 7.012

3.  Mapping RNAPII CTD Phosphorylation Reveals That the Identity and Modification of Seventh Heptad Residues Direct Tyr1 Phosphorylation.

Authors:  Nathaniel T Burkholder; Sarah N Sipe; Edwin E Escobar; Mukeshkumar Venkatramani; Seema Irani; Wanjie Yang; Haoyi Wu; Wendy M Matthews; Jennifer S Brodbelt; Yan Zhang
Journal:  ACS Chem Biol       Date:  2019-10-07       Impact factor: 5.100

4.  Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription.

Authors:  Julieta Rivosecchi; Marc Larochelle; Camille Teste; Frédéric Grenier; Amélie Malapert; Emiliano P Ricci; Pascal Bernard; François Bachand; Vincent Vanoosthuyse
Journal:  EMBO J       Date:  2019-07-11       Impact factor: 11.598

Review 5.  Regulatory feedback from nascent RNA to chromatin and transcription.

Authors:  Lenka Skalska; Manuel Beltran-Nebot; Jernej Ule; Richard G Jenner
Journal:  Nat Rev Mol Cell Biol       Date:  2017-03-08       Impact factor: 94.444

Review 6.  Towards an understanding of regulating Cajal body activity by protein modification.

Authors:  Michael D Hebert; Aaron R Poole
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

7.  The C-Terminal Domain of RNA Polymerase II Is a Multivalent Targeting Sequence that Supports Drosophila Development with Only Consensus Heptads.

Authors:  Feiyue Lu; Bede Portz; David S Gilmour
Journal:  Mol Cell       Date:  2019-02-11       Impact factor: 17.970

Review 8.  R-Loops as Cellular Regulators and Genomic Threats.

Authors:  Madzia P Crossley; Michael Bocek; Karlene A Cimprich
Journal:  Mol Cell       Date:  2019-02-07       Impact factor: 17.970

Review 9.  R-loop: an emerging regulator of chromatin dynamics.

Authors:  Qais Al-Hadid; Yanzhong Yang
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2016-06-01       Impact factor: 3.848

Review 10.  The pol II CTD: new twists in the tail.

Authors:  Justyna Zaborowska; Sylvain Egloff; Shona Murphy
Journal:  Nat Struct Mol Biol       Date:  2016-09-06       Impact factor: 15.369

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