Literature DB >> 26695070

Tools for the Microbiome: Nano and Beyond.

Julie S Biteen1, Paul C Blainey2, Zoe G Cardon3, Miyoung Chun4, George M Church5, Pieter C Dorrestein, Scott E Fraser6, Jack A Gilbert7,8, Janet K Jansson9, Rob Knight, Jeff F Miller, Aydogan Ozcan, Kimberly A Prather, Stephen R Quake, Edward G Ruby10, Pamela A Silver5, Sharif Taha4, Ger van den Engh11,12, Paul S Weiss, Gerard C L Wong, Aaron T Wright9, Thomas D Young.   

Abstract

The microbiome presents great opportunities for understanding and improving the world around us and elucidating the interactions that compose it. The microbiome also poses tremendous challenges for mapping and manipulating the entangled networks of interactions among myriad diverse organisms. Here, we describe the opportunities, technical needs, and potential approaches to address these challenges, based on recent and upcoming advances in measurement and control at the nanoscale and beyond. These technical needs will provide the basis for advancing the largely descriptive studies of the microbiome to the theoretical and mechanistic understandings that will underpin the discipline of microbiome engineering. We anticipate that the new tools and methods developed will also be more broadly useful in environmental monitoring, medicine, forensics, and other areas.

Mesh:

Year:  2015        PMID: 26695070     DOI: 10.1021/acsnano.5b07826

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  32 in total

1.  Quantitative SIMS Imaging of Agar-Based Microbial Communities.

Authors:  Sage J B Dunham; Joanna F Ellis; Nameera F Baig; Nydia Morales-Soto; Tianyuan Cao; Joshua D Shrout; Paul W Bohn; Jonathan V Sweedler
Journal:  Anal Chem       Date:  2018-04-13       Impact factor: 6.986

Review 2.  Natural product discovery from the human microbiome.

Authors:  Matthew R Wilson; Li Zha; Emily P Balskus
Journal:  J Biol Chem       Date:  2017-04-07       Impact factor: 5.157

Review 3.  Primer in Genetics and Genomics, Article 2-Advancing Nursing Research With Genomic Approaches.

Authors:  Hyunhwa Lee; Jessica Gill; Taura Barr; Sijung Yun; Hyungsuk Kim
Journal:  Biol Res Nurs       Date:  2017-01-30       Impact factor: 2.522

Review 4.  An insider's perspective: Bacteroides as a window into the microbiome.

Authors:  Aaron G Wexler; Andrew L Goodman
Journal:  Nat Microbiol       Date:  2017-04-25       Impact factor: 17.745

5.  Three-dimensional architecture of Vibrio cholera biofilms.

Authors:  Gerard C L Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-24       Impact factor: 11.205

Review 6.  Microbiome-wide association studies link dynamic microbial consortia to disease.

Authors:  Jack A Gilbert; Robert A Quinn; Justine Debelius; Zhenjiang Z Xu; James Morton; Neha Garg; Janet K Jansson; Pieter C Dorrestein; Rob Knight
Journal:  Nature       Date:  2016-07-07       Impact factor: 49.962

7.  Host-pathogen interactions: A cholera surveillance system.

Authors:  Aaron T Wright
Journal:  Nat Chem Biol       Date:  2016-02-22       Impact factor: 15.040

8.  Microbiome precision editing: Using PEG as a selective fermentation initiator against methicillin-resistant Staphylococcus aureus.

Authors:  Ming-Shan Kao; Stephen Huang; Wei-Lin Chang; Ming-Fa Hsieh; Chun-Jen Huang; Richard L Gallo; Chun-Ming Huang
Journal:  Biotechnol J       Date:  2017-02-08       Impact factor: 4.677

9.  Monitoring bacterial biofilms with a microfluidic flow chip designed for imaging with white-light interferometry.

Authors:  Michelle Brann; Jonathan D Suter; R Shane Addleman; Curtis Larimer
Journal:  Biomicrofluidics       Date:  2017-08-18       Impact factor: 2.800

Review 10.  The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.

Authors:  Christian Milani; Sabrina Duranti; Francesca Bottacini; Eoghan Casey; Francesca Turroni; Jennifer Mahony; Clara Belzer; Susana Delgado Palacio; Silvia Arboleya Montes; Leonardo Mancabelli; Gabriele Andrea Lugli; Juan Miguel Rodriguez; Lars Bode; Willem de Vos; Miguel Gueimonde; Abelardo Margolles; Douwe van Sinderen; Marco Ventura
Journal:  Microbiol Mol Biol Rev       Date:  2017-11-08       Impact factor: 11.056

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