Literature DB >> 26686627

Controlling the Cyanobacterial Clock by Synthetically Rewiring Metabolism.

Gopal K Pattanayak1, Guillaume Lambert1, Kevin Bernat1, Michael J Rust2.   

Abstract

Circadian clocks are oscillatory systems that allow organisms to anticipate rhythmic changes in the environment. Several studies have shown that circadian clocks are connected to metabolism, but it is not generally clear whether metabolic signaling is one voice among many that influence the clock or whether metabolic cycling is the major clock synchronizer. To address this question in cyanobacteria, we used a synthetic biology approach to make normally autotrophic cells capable of growth on exogenous sugar. This allowed us to manipulate metabolism independently from light and dark. We found that feeding sugar to cultures blocked the clock-resetting effect of a dark pulse. Furthermore, in the absence of light, the clock efficiently synchronizes to metabolic cycles driven by rhythmic feeding. We conclude that metabolic activity, independent of its source, is the primary clock driver in cyanobacteria.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26686627      PMCID: PMC4691564          DOI: 10.1016/j.celrep.2015.11.031

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  24 in total

1.  CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock.

Authors:  O Schmitz; M Katayama; S B Williams; T Kondo; S S Golden
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

2.  Origin and evolution of circadian clock genes in prokaryotes.

Authors:  Volodymyr Dvornyk; Oxana Vinogradova; Eviatar Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

3.  ldpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatus PCC 7942.

Authors:  Mitsunori Katayama; Takao Kondo; Jin Xiong; Susan S Golden
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

4.  Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro.

Authors:  Masato Nakajima; Keiko Imai; Hiroshi Ito; Taeko Nishiwaki; Yoriko Murayama; Hideo Iwasaki; Tokitaka Oyama; Takao Kondo
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

5.  Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock.

Authors:  Jeffrey R Chabot; Juan M Pedraza; Prashant Luitel; Alexander van Oudenaarden
Journal:  Nature       Date:  2007-12-20       Impact factor: 49.962

6.  Ordered phosphorylation governs oscillation of a three-protein circadian clock.

Authors:  Michael J Rust; Joseph S Markson; William S Lane; Daniel S Fisher; Erin K O'Shea
Journal:  Science       Date:  2007-10-04       Impact factor: 47.728

7.  Detection of rhythmic bioluminescence from luciferase reporters in cyanobacteria.

Authors:  Shannon R Mackey; Jayna L Ditty; Eugenia M Clerico; Susan S Golden
Journal:  Methods Mol Biol       Date:  2007

8.  Internal pH and ATP-ADP pools in the cyanobacterium Synechococcus sp. during exposure to growth-inhibiting low pH.

Authors:  T Kallas; R W Castenholz
Journal:  J Bacteriol       Date:  1982-01       Impact factor: 3.490

9.  Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria.

Authors:  T Kondo; C A Strayer; R D Kulkarni; W Taylor; M Ishiura; S S Golden; C H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

10.  Expression of a family of psbA genes encoding a photosystem II polypeptide in the cyanobacterium Anacystis nidulans R2.

Authors:  S S Golden; J Brusslan; R Haselkorn
Journal:  EMBO J       Date:  1986-11       Impact factor: 11.598

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  14 in total

Review 1.  Gut microbiota as a transducer of dietary cues to regulate host circadian rhythms and metabolism.

Authors:  Hyoann Choi; Mrinalini C Rao; Eugene B Chang
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2021-05-17       Impact factor: 46.802

Review 2.  Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output.

Authors:  Jennifer M Hurley; Jennifer J Loros; Jay C Dunlap
Journal:  Trends Biochem Sci       Date:  2016-08-03       Impact factor: 13.807

3.  Evolutionary Phase Transitions in Random Environments.

Authors:  Antun Skanata; Edo Kussell
Journal:  Phys Rev Lett       Date:  2016-07-15       Impact factor: 9.161

4.  Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations.

Authors:  Joris Paijmans; David K Lubensky; Pieter Rein Ten Wolde
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

5.  A thermodynamically consistent model of the post-translational Kai circadian clock.

Authors:  Joris Paijmans; David K Lubensky; Pieter Rein Ten Wolde
Journal:  PLoS Comput Biol       Date:  2017-03-15       Impact factor: 4.475

6.  The cyanobacterial circadian clock follows midday in vivo and in vitro.

Authors:  Eugene Leypunskiy; Jenny Lin; Haneul Yoo; UnJin Lee; Aaron R Dinner; Michael J Rust
Journal:  Elife       Date:  2017-07-07       Impact factor: 8.140

Review 7.  Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach.

Authors:  Stefanie Westermark; Ralf Steuer
Journal:  Front Bioeng Biotechnol       Date:  2016-12-26

8.  Adjustment of the Arabidopsis circadian oscillator by sugar signalling dictates the regulation of starch metabolism.

Authors:  Motohide Seki; Takayuki Ohara; Timothy J Hearn; Alexander Frank; Viviane C H da Silva; Camila Caldana; Alex A R Webb; Akiko Satake
Journal:  Sci Rep       Date:  2017-08-16       Impact factor: 4.379

Review 9.  Circadian and Sleep Metabolomics Across Species.

Authors:  Dania M Malik; Georgios K Paschos; Amita Sehgal; Aalim M Weljie
Journal:  J Mol Biol       Date:  2020-05-03       Impact factor: 5.469

10.  Switching of metabolic programs in response to light availability is an essential function of the cyanobacterial circadian output pathway.

Authors:  Anna M Puszynska; Erin K O'Shea
Journal:  Elife       Date:  2017-04-21       Impact factor: 8.140

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