Literature DB >> 26682498

The Spliceosome: The Ultimate RNA Chaperone and Sculptor.

Panagiotis Papasaikas1, Juan Valcárcel2.   

Abstract

The spliceosome, one of the most complex machineries of eukaryotic cells, removes intronic sequences from primary transcripts to generate functional messenger and long noncoding RNAs (lncRNA). Genetic, biochemical, and structural data reveal that the spliceosome is an RNA-based enzyme. Striking mechanistic and structural similarities strongly argue that pre-mRNA introns originated from self-catalytic group II ribozymes. However, in the spliceosome, protein components organize and activate the catalytic-site RNAs, and recognize and pair together splice sites at intron boundaries. The spliceosome is a dynamic, reversible, and flexible machine that chaperones small nuclear (sn) RNAs and a variety of pre-mRNA sequences into conformations that enable intron removal. This malleability likely contributes to the regulation of alternative splicing, a prevalent process contributing to cell differentiation, homeostasis, and disease.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26682498     DOI: 10.1016/j.tibs.2015.11.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  103 in total

1.  U2AF65 assemblies drive sequence-specific splice site recognition.

Authors:  Manel Tari; Valérie Manceau; Jean de Matha Salone; Asaki Kobayashi; David Pastré; Alexandre Maucuer
Journal:  EMBO Rep       Date:  2019-07-04       Impact factor: 8.807

2.  Identification of Footprints of RNA:Protein Complexes via RNA Immunoprecipitation in Tandem Followed by Sequencing (RIPiT-Seq).

Authors:  Lauren Woodward; Pooja Gangras; Guramrit Singh
Journal:  J Vis Exp       Date:  2019-07-10       Impact factor: 1.355

Review 3.  Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations.

Authors:  Giulia Palermo; Lorenzo Casalino; Alessandra Magistrato; J Andrew McCammon
Journal:  J Struct Biol       Date:  2019-03-15       Impact factor: 2.867

Review 4.  A novel role of U1 snRNP: Splice site selection from a distance.

Authors:  Ravindra N Singh; Natalia N Singh
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-04-28       Impact factor: 4.490

Review 5.  Alternative splicing of lncRNAs in human diseases.

Authors:  Jiaxi Chen; Yawen Liu; Jingyu Min; Huizhi Wang; Feifan Li; Chunhui Xu; Aihua Gong; Min Xu
Journal:  Am J Cancer Res       Date:  2021-03-01       Impact factor: 6.166

6.  UXT-AS1-induced alternative splicing of UXT is associated with tumor progression in colorectal cancer.

Authors:  Jun Yin; Wei Luo; Xiang Zeng; Lisi Zeng; Zhiyang Li; Xiaofang Deng; Xiaojun Tan; Weimin Hu
Journal:  Am J Cancer Res       Date:  2017-03-01       Impact factor: 6.166

Review 7.  Splicing Factor Mutations in Myelodysplasias: Insights from Spliceosome Structures.

Authors:  Jermaine L Jenkins; Clara L Kielkopf
Journal:  Trends Genet       Date:  2017-03-31       Impact factor: 11.639

8.  All-atom simulations disentangle the functional dynamics underlying gene maturation in the intron lariat spliceosome.

Authors:  Lorenzo Casalino; Giulia Palermo; Angelo Spinello; Ursula Rothlisberger; Alessandra Magistrato
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

9.  Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Authors:  Dinanath Sulakhe; Mark D'Souza; Sheng Wang; Sandhya Balasubramanian; Prashanth Athri; Bingqing Xie; Stefan Canzar; Gady Agam; T Conrad Gilliam; Natalia Maltsev
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

Review 10.  Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors:  Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-20       Impact factor: 9.957

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