Literature DB >> 26666674

The D-isoAsp-25 variant of histone H2B is highly enriched in active chromatin: potential role in the regulation of gene expression?

Zhenxia Qin1,2, Jeff X Zhu3,4, Dana W Aswad5.   

Abstract

Approximately 12 % of histone H2B in mammalian brain contains an unusual D-aspartate residue in its N-terminal tail. Most of this D-aspartate is linked to the C-flanking glycine via an isopeptide bond. To explore the possible significance of these modifications, we generated an antibody to the D-isoaspartyl form of H2B, and used it to assess its levels in H2B associated with "active" vs. "silent" chromatin. We found that the D-isoaspartyl form of H2B appears to be highly enriched in the former. This irreversible modification could serve a novel regulatory function in gene expression.

Entities:  

Keywords:  Chromatin; D-Aspartate; Histone; Isoaspartate; Isomerization; Methylation

Mesh:

Substances:

Year:  2015        PMID: 26666674      PMCID: PMC4740207          DOI: 10.1007/s00726-015-2140-9

Source DB:  PubMed          Journal:  Amino Acids        ISSN: 0939-4451            Impact factor:   3.520


  10 in total

1.  Isoaspartate in peptides and proteins: formation, significance, and analysis.

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Journal:  J Pharm Biomed Anal       Date:  2000-01       Impact factor: 3.935

Review 2.  Histone exchange, chromatin structure and the regulation of transcription.

Authors:  Swaminathan Venkatesh; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

3.  Deficiency of a protein-repair enzyme results in the accumulation of altered proteins, retardation of growth, and fatal seizures in mice.

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Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

4.  Structural integrity of histone H2B in vivo requires the activity of protein L-isoaspartate O-methyltransferase, a putative protein repair enzyme.

Authors:  A L Young; W G Carter; H A Doyle; M J Mamula; D W Aswad
Journal:  J Biol Chem       Date:  2001-07-30       Impact factor: 5.157

5.  Protein L-isoaspartyl methyltransferase catalyzes in vivo racemization of Aspartate-25 in mammalian histone H2B.

Authors:  Glen W Young; Sarah A Hoofring; Mark J Mamula; Hester A Doyle; Gerard J Bunick; Yonglin Hu; Dana W Aswad
Journal:  J Biol Chem       Date:  2005-05-20       Impact factor: 5.157

6.  Conversion of isoaspartyl peptides to normal peptides: implications for the cellular repair of damaged proteins.

Authors:  P N McFadden; S Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

7.  Acquisition of chemiluminescent signals from immunoblots with a digital single-lens reflex camera.

Authors:  Mitri K Khoury; Ian Parker; Dana W Aswad
Journal:  Anal Biochem       Date:  2009-09-27       Impact factor: 3.365

8.  Propensity for spontaneous succinimide formation from aspartyl and asparaginyl residues in cellular proteins.

Authors:  S Clarke
Journal:  Int J Pept Protein Res       Date:  1987-12

9.  Protein carboxyl methyltransferase facilitates conversion of atypical L-isoaspartyl peptides to normal L-aspartyl peptides.

Authors:  B A Johnson; E D Murray; S Clarke; D B Glass; D W Aswad
Journal:  J Biol Chem       Date:  1987-04-25       Impact factor: 5.157

10.  Structure-based prediction of asparagine and aspartate degradation sites in antibody variable regions.

Authors:  Jasmin F Sydow; Florian Lipsmeier; Vincent Larraillet; Maximiliane Hilger; Bjoern Mautz; Michael Mølhøj; Jan Kuentzer; Stefan Klostermann; Juergen Schoch; Hans R Voelger; Joerg T Regula; Patrick Cramer; Apollon Papadimitriou; Hubert Kettenberger
Journal:  PLoS One       Date:  2014-06-24       Impact factor: 3.240

  10 in total
  5 in total

Review 1.  PRMT7 as a unique member of the protein arginine methyltransferase family: A review.

Authors:  Kanishk Jain; Steven G Clarke
Journal:  Arch Biochem Biophys       Date:  2019-02-22       Impact factor: 4.013

2.  Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.

Authors:  Hideshi Yokoyama; Ryuta Mizutani; Shuji Noguchi; Naoki Hayashida
Journal:  Sci Rep       Date:  2019-12-06       Impact factor: 4.379

Review 3.  The Expanding Constellation of Histone Post-Translational Modifications in the Epigenetic Landscape.

Authors:  Vincenzo Cavalieri
Journal:  Genes (Basel)       Date:  2021-10-10       Impact factor: 4.096

Review 4.  Post-Translational Modifications of Protein Backbones: Unique Functions, Mechanisms, and Challenges.

Authors:  Manuel M Müller
Journal:  Biochemistry       Date:  2017-11-03       Impact factor: 3.162

5.  Mechanisms of Deamidation of Asparagine Residues and Effects of Main-Chain Conformation on Activation Energy.

Authors:  Koichi Kato; Tomoki Nakayoshi; Eiji Kurimoto; Akifumi Oda
Journal:  Int J Mol Sci       Date:  2020-09-24       Impact factor: 5.923

  5 in total

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