Literature DB >> 26643069

Gates, Channels, and Switches: Elements of the Proteasome Machine.

Daniel Finley1, Xiang Chen2, Kylie J Walters3.   

Abstract

The proteasome has emerged as an intricate machine that has dynamic mechanisms to regulate the timing of its activity, its selection of substrates, and its processivity. The 19-subunit regulatory particle (RP) recognizes ubiquitinated proteins, removes ubiquitin, and injects the target protein into the proteolytic chamber of the core particle (CP) via a narrow channel. Translocation into the CP requires substrate unfolding, which is achieved through mechanical force applied by a hexameric ATPase ring of the RP. Recent cryoelectron microscopy (cryoEM) studies have defined distinct conformational states of the RP, providing illustrative snapshots of what appear to be progressive steps of substrate engagement. Here, we bring together this new information with molecular analyses to describe the principles of proteasome activity and regulation.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ATPase; proteasome; protein degradation; ubiquitin

Mesh:

Substances:

Year:  2015        PMID: 26643069      PMCID: PMC4706478          DOI: 10.1016/j.tibs.2015.10.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  158 in total

1.  The size of the proteasomal substrate determines whether its degradation will be mediated by mono- or polyubiquitylation.

Authors:  Nitzan Shabek; Yifat Herman-Bachinsky; Samuel Buchsbaum; Oded Lewinson; Mahmood Haj-Yahya; Mirva Hejjaoui; Hilal A Lashuel; Thomas Sommer; Ashraf Brik; Aaron Ciechanover
Journal:  Mol Cell       Date:  2012-08-16       Impact factor: 17.970

2.  Structure of the 26S proteasome with ATP-γS bound provides insights into the mechanism of nucleotide-dependent substrate translocation.

Authors:  Paweł Śledź; Pia Unverdorben; Florian Beck; Günter Pfeifer; Andreas Schweitzer; Friedrich Förster; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

Review 3.  Structural biology of the proteasome.

Authors:  Erik Kish-Trier; Christopher P Hill
Journal:  Annu Rev Biophys       Date:  2013-02-13       Impact factor: 12.981

Review 4.  Molecular architecture and assembly of the eukaryotic proteasome.

Authors:  Robert J Tomko; Mark Hochstrasser
Journal:  Annu Rev Biochem       Date:  2013-03-13       Impact factor: 23.643

5.  Acetylation-mediated proteasomal degradation of core histones during DNA repair and spermatogenesis.

Authors:  Min-Xian Qian; Ye Pang; Cui Hua Liu; Kousuke Haratake; Bo-Yu Du; Dan-Yang Ji; Guang-Fei Wang; Qian-Qian Zhu; Wei Song; Yadong Yu; Xiao-Xu Zhang; Hai-Tao Huang; Shiying Miao; Lian-Bin Chen; Zi-Hui Zhang; Ya-Nan Liang; Shan Liu; Hwangho Cha; Dong Yang; Yonggong Zhai; Takuo Komatsu; Fuminori Tsuruta; Haitao Li; Cheng Cao; Wei Li; Guo-Hong Li; Yifan Cheng; Tomoki Chiba; Linfang Wang; Alfred L Goldberg; Yan Shen; Xiao-Bo Qiu
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582

6.  Localization of the regulatory particle subunit Sem1 in the 26S proteasome.

Authors:  Stefan Bohn; Eri Sakata; Florian Beck; Ganesh R Pathare; Jérôme Schnitger; Istvan Nágy; Wolfgang Baumeister; Friedrich Förster
Journal:  Biochem Biophys Res Commun       Date:  2013-05-01       Impact factor: 3.575

7.  Development of proteasome inhibitors as research tools and cancer drugs.

Authors:  Alfred L Goldberg
Journal:  J Cell Biol       Date:  2012-11-12       Impact factor: 10.539

8.  Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes?

Authors:  James A Nathan; Hyoung Tae Kim; Lily Ting; Steven P Gygi; Alfred L Goldberg
Journal:  EMBO J       Date:  2013-01-11       Impact factor: 11.598

9.  Proteasome regulation by ADP-ribosylation.

Authors:  Park F Cho-Park; Hermann Steller
Journal:  Cell       Date:  2013-04-25       Impact factor: 41.582

10.  Reconfiguration of the proteasome during chaperone-mediated assembly.

Authors:  Soyeon Park; Xueming Li; Ho Min Kim; Chingakham Ranjit Singh; Geng Tian; Martin A Hoyt; Scott Lovell; Kevin P Battaile; Michal Zolkiewski; Philip Coffino; Jeroen Roelofs; Yifan Cheng; Daniel Finley
Journal:  Nature       Date:  2013-05-05       Impact factor: 49.962

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  111 in total

1.  Ramping up degradation for proliferation.

Authors:  Jon M Huibregtse; Andreas Matouschek
Journal:  Nat Cell Biol       Date:  2016-02       Impact factor: 28.824

2.  Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome.

Authors:  Xiang Chen; Leah Randles; Ke Shi; Sergey G Tarasov; Hideki Aihara; Kylie J Walters
Journal:  Structure       Date:  2016-07-07       Impact factor: 5.006

3.  Small Molecule Enhancement of 20S Proteasome Activity Targets Intrinsically Disordered Proteins.

Authors:  Corey L Jones; Evert Njomen; Benita Sjögren; Thomas S Dexheimer; Jetze J Tepe
Journal:  ACS Chem Biol       Date:  2017-08-01       Impact factor: 5.100

4.  Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome.

Authors:  Yuan Shi; Xiang Chen; Suzanne Elsasser; Bradley B Stocks; Geng Tian; Byung-Hoon Lee; Yanhong Shi; Naixia Zhang; Stefanie A H de Poot; Fabian Tuebing; Shuangwu Sun; Jacob Vannoy; Sergey G Tarasov; John R Engen; Daniel Finley; Kylie J Walters
Journal:  Science       Date:  2016-02-19       Impact factor: 47.728

5.  An Extended Conformation for K48 Ubiquitin Chains Revealed by the hRpn2:Rpn13:K48-Diubiquitin Structure.

Authors:  Xiuxiu Lu; Danielle L Ebelle; Hiroshi Matsuo; Kylie J Walters
Journal:  Structure       Date:  2020-03-10       Impact factor: 5.006

6.  Structural Insight into Ubiquitin-Like Protein Recognition and Oligomeric States of JAMM/MPN+ Proteases.

Authors:  Shiyun Cao; Sylvain Engilberge; Eric Girard; Frank Gabel; Bruno Franzetti; Julie A Maupin-Furlow
Journal:  Structure       Date:  2017-05-04       Impact factor: 5.006

7.  Diverse fate of ubiquitin chain moieties: The proximal is degraded with the target, and the distal protects the proximal from removal and recycles.

Authors:  Hao Sun; Sachitanand M Mali; Sumeet K Singh; Roman Meledin; Ashraf Brik; Yong Tae Kwon; Yelena Kravtsova-Ivantsiv; Beatrice Bercovich; Aaron Ciechanover
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-13       Impact factor: 11.205

8.  Regulation of Autophagic Flux by the 20S Proteasome.

Authors:  Evert Njomen; Jetze J Tepe
Journal:  Cell Chem Biol       Date:  2019-07-18       Impact factor: 8.116

9.  PI31 Is an Adaptor Protein for Proteasome Transport in Axons and Required for Synaptic Development.

Authors:  Kai Liu; Sandra Jones; Adi Minis; Jose Rodriguez; Henrik Molina; Hermann Steller
Journal:  Dev Cell       Date:  2019-07-18       Impact factor: 12.270

10.  UBL domain of Usp14 and other proteins stimulates proteasome activities and protein degradation in cells.

Authors:  Hyoung Tae Kim; Alfred L Goldberg
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-28       Impact factor: 11.205

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