Literature DB >> 26642006

Genomic divergence and brain evolution: How regulatory DNA influences development of the cerebral cortex.

Debra L Silver1,2,3,4.   

Abstract

The cerebral cortex controls our most distinguishing higher cognitive functions. Human-specific gene expression differences are abundant in the cerebral cortex, yet we have only begun to understand how these variations impact brain function. This review discusses the current evidence linking non-coding regulatory DNA changes, including enhancers, with neocortical evolution. Functional interrogation using animal models reveals converging roles for our genome in key aspects of cortical development including progenitor cell cycle and neuronal signaling. New technologies, including iPS cells and organoids, offer potential alternatives to modeling evolutionary modifications in a relevant species context. Several diseases rooted in the cerebral cortex uniquely manifest in humans compared to other primates, thus highlighting the importance of understanding human brain differences. Future studies of regulatory loci, including those implicated in disease, will collectively help elucidate key cellular and genetic mechanisms underlying our distinguishing cognitive traits.
© 2015 WILEY Periodicals, Inc.

Entities:  

Keywords:  corticogenesis; enhancer; evolution; neocortex; stem cell

Mesh:

Substances:

Year:  2015        PMID: 26642006      PMCID: PMC4718859          DOI: 10.1002/bies.201500108

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  94 in total

1.  Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

Authors:  Hélène Hagège; Petra Klous; Caroline Braem; Erik Splinter; Job Dekker; Guy Cathala; Wouter de Laat; Thierry Forné
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 2.  The outer subventricular zone and primate-specific cortical complexification.

Authors:  Colette Dehay; Henry Kennedy; Kenneth S Kosik
Journal:  Neuron       Date:  2015-02-18       Impact factor: 17.173

Review 3.  Neural progenitors, neurogenesis and the evolution of the neocortex.

Authors:  Marta Florio; Wieland B Huttner
Journal:  Development       Date:  2014-06       Impact factor: 6.868

4.  Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.

Authors:  David Gokhman; Eitan Lavi; Kay Prüfer; Mario F Fraga; José A Riancho; Janet Kelso; Svante Pääbo; Eran Meshorer; Liran Carmel
Journal:  Science       Date:  2014-04-17       Impact factor: 47.728

5.  A forkhead-domain gene is mutated in a severe speech and language disorder.

Authors:  C S Lai; S E Fisher; J A Hurst; F Vargha-Khadem; A P Monaco
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

6.  Novel primate miRNAs coevolved with ancient target genes in germinal zone-specific expression patterns.

Authors:  Mary L Arcila; Marion Betizeau; Xiaolu A Cambronne; Elmer Guzman; Nathalie Doerflinger; Frantz Bouhallier; Hongjun Zhou; Bian Wu; Neha Rani; Danielle S Bassett; Ugo Borello; Cyril Huissoud; Richard H Goodman; Colette Dehay; Kenneth S Kosik
Journal:  Neuron       Date:  2014-02-27       Impact factor: 17.173

7.  Human-specific loss of regulatory DNA and the evolution of human-specific traits.

Authors:  Cory Y McLean; Philip L Reno; Alex A Pollen; Abraham I Bassan; Terence D Capellini; Catherine Guenther; Vahan B Indjeian; Xinhong Lim; Douglas B Menke; Bruce T Schaar; Aaron M Wenger; Gill Bejerano; David M Kingsley
Journal:  Nature       Date:  2011-03-10       Impact factor: 49.962

8.  The complete genome sequence of a Neanderthal from the Altai Mountains.

Authors:  Kay Prüfer; Fernando Racimo; Nick Patterson; Flora Jay; Sriram Sankararaman; Susanna Sawyer; Anja Heinze; Gabriel Renaud; Peter H Sudmant; Cesare de Filippo; Heng Li; Swapan Mallick; Michael Dannemann; Qiaomei Fu; Martin Kircher; Martin Kuhlwilm; Michael Lachmann; Matthias Meyer; Matthias Ongyerth; Michael Siebauer; Christoph Theunert; Arti Tandon; Priya Moorjani; Joseph Pickrell; James C Mullikin; Samuel H Vohr; Richard E Green; Ines Hellmann; Philip L F Johnson; Hélène Blanche; Howard Cann; Jacob O Kitzman; Jay Shendure; Evan E Eichler; Ed S Lein; Trygve E Bakken; Liubov V Golovanova; Vladimir B Doronichev; Michael V Shunkov; Anatoli P Derevianko; Bence Viola; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

9.  Evolutionarily dynamic alternative splicing of GPR56 regulates regional cerebral cortical patterning.

Authors:  Byoung-Il Bae; Ian Tietjen; Kutay D Atabay; Gilad D Evrony; Matthew B Johnson; Ebenezer Asare; Peter P Wang; Ayako Y Murayama; Kiho Im; Steven N Lisgo; Lynne Overman; Nenad Šestan; Bernard S Chang; A James Barkovich; P Ellen Grant; Meral Topçu; Jeffrey Politsky; Hideyuki Okano; Xianhua Piao; Christopher A Walsh
Journal:  Science       Date:  2014-02-14       Impact factor: 47.728

10.  A high-resolution map of the three-dimensional chromatin interactome in human cells.

Authors:  Fulai Jin; Yan Li; Jesse R Dixon; Siddarth Selvaraj; Zhen Ye; Ah Young Lee; Chia-An Yen; Anthony D Schmitt; Celso A Espinoza; Bing Ren
Journal:  Nature       Date:  2013-10-20       Impact factor: 49.962

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  17 in total

Review 1.  Evolution of the Human Nervous System Function, Structure, and Development.

Authors:  André M M Sousa; Kyle A Meyer; Gabriel Santpere; Forrest O Gulden; Nenad Sestan
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

Review 2.  'Evolutionary medicine' perspectives on Alzheimer's Disease: Review and new directions.

Authors:  Molly Fox
Journal:  Ageing Res Rev       Date:  2018-07-27       Impact factor: 10.895

Review 3.  Molecular and cellular evolution of corticogenesis in amniotes.

Authors:  Adrián Cárdenas; Víctor Borrell
Journal:  Cell Mol Life Sci       Date:  2019-09-28       Impact factor: 9.261

4.  Epigenome profiling and editing of neocortical progenitor cells during development.

Authors:  Mareike Albert; Nereo Kalebic; Marta Florio; Naharajan Lakshmanaperumal; Christiane Haffner; Holger Brandl; Ian Henry; Wieland B Huttner
Journal:  EMBO J       Date:  2017-08-01       Impact factor: 11.598

Review 5.  Enhancing our brains: Genomic mechanisms underlying cortical evolution.

Authors:  Caitlyn Mitchell; Debra L Silver
Journal:  Semin Cell Dev Biol       Date:  2017-08-31       Impact factor: 7.727

6.  Molecular and cellular reorganization of neural circuits in the human lineage.

Authors:  André M M Sousa; Ying Zhu; Mary Ann Raghanti; Robert R Kitchen; Marco Onorati; Andrew T N Tebbenkamp; Bernardo Stutz; Kyle A Meyer; Mingfeng Li; Yuka Imamura Kawasawa; Fuchen Liu; Raquel Garcia Perez; Marta Mele; Tiago Carvalho; Mario Skarica; Forrest O Gulden; Mihovil Pletikos; Akemi Shibata; Alexa R Stephenson; Melissa K Edler; John J Ely; John D Elsworth; Tamas L Horvath; Patrick R Hof; Thomas M Hyde; Joel E Kleinman; Daniel R Weinberger; Mark Reimers; Richard P Lifton; Shrikant M Mane; James P Noonan; Matthew W State; Ed S Lein; James A Knowles; Tomas Marques-Bonet; Chet C Sherwood; Mark B Gerstein; Nenad Sestan
Journal:  Science       Date:  2017-11-24       Impact factor: 47.728

7.  NEUROD2 Regulates Stim1 Expression and Store-Operated Calcium Entry in Cortical Neurons.

Authors:  Gokhan Guner; Gizem Guzelsoy; Fatma Sadife Isleyen; Gulcan Semra Sahin; Cansu Akkaya; Efil Bayam; Eser Ilgin Kotan; Alkan Kabakcioglu; Gulayse Ince-Dunn
Journal:  eNeuro       Date:  2017-03-09

Review 8.  Human Accelerated Regions and Other Human-Specific Sequence Variations in the Context of Evolution and Their Relevance for Brain Development.

Authors:  Anastasia Levchenko; Alexander Kanapin; Anastasia Samsonova; Raul R Gainetdinov
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

Review 9.  Transcriptional and Post-Transcriptional Mechanisms of the Development of Neocortical Lamination.

Authors:  Tatiana Popovitchenko; Mladen-Roko Rasin
Journal:  Front Neuroanat       Date:  2017-11-09       Impact factor: 3.856

10.  A single splice site mutation in human-specific ARHGAP11B causes basal progenitor amplification.

Authors:  Marta Florio; Takashi Namba; Svante Pääbo; Michael Hiller; Wieland B Huttner
Journal:  Sci Adv       Date:  2016-12-07       Impact factor: 14.136

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