Literature DB >> 26621737

Production of functional small interfering RNAs by an amino-terminal deletion mutant of human Dicer.

Edward M Kennedy1, Adam W Whisnant1, Anand V R Kornepati1, Joy B Marshall1, Hal P Bogerd1, Bryan R Cullen2.   

Abstract

Although RNA interference (RNAi) functions as a potent antiviral innate-immune response in plants and invertebrates, mammalian somatic cells appear incapable of mounting an RNAi response and few, if any, small interfering RNAs (siRNAs) can be detected. To examine why siRNA production is inefficient, we have generated double-knockout human cells lacking both Dicer and protein kinase RNA-activated. Using these cells, which tolerate double-stranded RNA expression, we show that a mutant form of human Dicer lacking the amino-terminal helicase domain can process double-stranded RNAs to produce high levels of siRNAs that are readily detectable by Northern blot, are loaded into RNA-induced silencing complexes, and can effectively and specifically inhibit the expression of cognate mRNAs. Remarkably, overexpression of this mutant Dicer, but not wild-type Dicer, also resulted in a partial inhibition of Influenza A virus-but not poliovirus-replication in human cells.

Entities:  

Keywords:  Dicer; RNA interference; innate immunity; microRNAs; small interfering RNAs

Mesh:

Substances:

Year:  2015        PMID: 26621737      PMCID: PMC4687602          DOI: 10.1073/pnas.1513421112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  dsRNA-mediated gene silencing in cultured Drosophila cells: a tissue culture model for the analysis of RNA interference.

Authors:  N J Caplen; J Fleenor; A Fire; R A Morgan
Journal:  Gene       Date:  2000-07-11       Impact factor: 3.688

2.  Stable suppression of gene expression by RNAi in mammalian cells.

Authors:  Patrick J Paddison; Amy A Caudy; Gregory J Hannon
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

3.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

4.  Double-stranded RNA-binding proteins could suppress RNA interference-mediated antiviral defences.

Authors:  Zsuzsanna Lichner; Dániel Silhavy; József Burgyán
Journal:  J Gen Virol       Date:  2003-04       Impact factor: 3.891

5.  Absence of non-specific effects of RNA interference triggered by long double-stranded RNA in mouse oocytes.

Authors:  Paula Stein; Fanyi Zeng; Hua Pan; Richard M Schultz
Journal:  Dev Biol       Date:  2005-09-09       Impact factor: 3.582

6.  Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP.

Authors:  Haidi Zhang; Fabrice A Kolb; Vincent Brondani; Eric Billy; Witold Filipowicz
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

7.  Ribonuclease activity and RNA binding of recombinant human Dicer.

Authors:  Patrick Provost; David Dishart; Johanne Doucet; David Frendewey; Bengt Samuelsson; Olof Rådmark
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

8.  Influenza A virus lacking the NS1 gene replicates in interferon-deficient systems.

Authors:  A García-Sastre; A Egorov; D Matassov; S Brandt; D E Levy; J E Durbin; P Palese; T Muster
Journal:  Virology       Date:  1998-12-20       Impact factor: 3.616

9.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

10.  miRBase: annotating high confidence microRNAs using deep sequencing data.

Authors:  Ana Kozomara; Sam Griffiths-Jones
Journal:  Nucleic Acids Res       Date:  2013-11-25       Impact factor: 16.971

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  37 in total

1.  Questioning antiviral RNAi in mammals.

Authors:  Benjamin R tenOever
Journal:  Nat Microbiol       Date:  2017-04-25       Impact factor: 17.745

2.  Reply to 'Questioning antiviral RNAi in mammals'.

Authors:  Kate L Jeffrey; Yang Li; Shou-Wei Ding
Journal:  Nat Microbiol       Date:  2017-04-25       Impact factor: 17.745

3.  Hepatitis C Virus Infection Is Inhibited by a Noncanonical Antiviral Signaling Pathway Targeted by NS3-NS4A.

Authors:  Christine Vazquez; Chin Yee Tan; Stacy M Horner
Journal:  J Virol       Date:  2019-11-13       Impact factor: 5.103

4.  The Epstein-Barr virus miR-BHRF1 microRNAs regulate viral gene expression in cis.

Authors:  Brigid Chiyoko Poling; Alexander M Price; Micah A Luftig; Bryan R Cullen
Journal:  Virology       Date:  2017-12       Impact factor: 3.616

5.  Zika virus infection induces RNAi-mediated antiviral immunity in human neural progenitors and brain organoids.

Authors:  Yan-Peng Xu; Yang Qiu; Boya Zhang; Guilai Chen; Qi Chen; Miao Wang; Fan Mo; Jiuyue Xu; Jin Wu; Rong-Rong Zhang; Meng-Li Cheng; Na-Na Zhang; Bao Lyu; Wen-Liang Zhu; Meng-Hua Wu; Qing Ye; Da Zhang; Jiang-Hong Man; Xiao-Feng Li; Jie Cui; Zhiheng Xu; Baoyang Hu; Xi Zhou; Cheng-Feng Qin
Journal:  Cell Res       Date:  2019-02-27       Impact factor: 25.617

6.  A lentiviral vector bearing a reverse intron demonstrates superior expression of both proteins and microRNAs.

Authors:  Brigid Chiyoko Poling; Kevin Tsai; Dong Kang; Linda Ren; Edward M Kennedy; Bryan R Cullen
Journal:  RNA Biol       Date:  2017-07-21       Impact factor: 4.652

7.  Altered m6A Modification of Specific Cellular Transcripts Affects Flaviviridae Infection.

Authors:  Nandan S Gokhale; Alexa B R McIntyre; Melissa D Mattocks; Christopher L Holley; Helen M Lazear; Christopher E Mason; Stacy M Horner
Journal:  Mol Cell       Date:  2019-12-03       Impact factor: 17.970

8.  Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells.

Authors:  Yang Li; Megha Basavappa; Jinfeng Lu; Shuwei Dong; D Alexander Cronkite; John T Prior; Hans-Christian Reinecker; Paul Hertzog; Yanhong Han; Wan-Xiang Li; Sihem Cheloufi; Fedor V Karginov; Shou-Wei Ding; Kate L Jeffrey
Journal:  Nat Microbiol       Date:  2016-12-05       Impact factor: 17.745

9.  The small GTPase RAB1B promotes antiviral innate immunity by interacting with TNF receptor-associated factor 3 (TRAF3).

Authors:  Dia C Beachboard; Moonhee Park; Madhuvanthi Vijayan; Daltry L Snider; Dillon J Fernando; Graham D Williams; Sydney Stanley; Michael J McFadden; Stacy M Horner
Journal:  J Biol Chem       Date:  2019-08-02       Impact factor: 5.157

Review 10.  AGO unchained: Canonical and non-canonical roles of Argonaute proteins in mammals.

Authors:  Laura Sala; Srividya Chandrasekhar; Joana A Vidigal
Journal:  Front Biosci (Landmark Ed)       Date:  2020-01-01
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