Literature DB >> 11818553

Stable suppression of gene expression by RNAi in mammalian cells.

Patrick J Paddison1, Amy A Caudy, Gregory J Hannon.   

Abstract

In a diverse group of organisms including plants, Caenorhabditis elegans, Drosophila, and trypanosomes, double-stranded RNA (dsRNA) is a potent trigger of gene silencing. In several model systems, this natural response has been developed into a powerful tool for the investigation of gene function. Use of RNA interference (RNAi) as a genetic tool has recently been extended to mammalian cells, being inducible by treatment with small, approximately 22-nt RNAs that mimic those produced in the first step of the silencing process. Here, we show that some cultured murine cells specifically silence gene expression upon treatment with long dsRNAs (approximately 500 nt). This response shows hallmarks of conventional RNAi including silencing at the posttranscriptional level and the endogenous production of approximately 22-nt small RNAs. Furthermore, enforced expression of long, hairpin dsRNAs induced stable gene silencing. The ability to create stable "knock-down" cell lines expands the utility of RNAi in mammalian cells by enabling examination of phenotypes that develop over long time periods and lays the groundwork for by using RNAi in phenotype-based, forward genetic selections.

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Year:  2002        PMID: 11818553      PMCID: PMC122210          DOI: 10.1073/pnas.032652399

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Heritable and inducible genetic interference by double-stranded RNA encoded by transgenes.

Authors:  N Tavernarakis; S L Wang; M Dorovkov; A Ryazanov; M Driscoll
Journal:  Nat Genet       Date:  2000-02       Impact factor: 38.330

2.  An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells.

Authors:  S M Hammond; E Bernstein; D Beach; G J Hannon
Journal:  Nature       Date:  2000-03-16       Impact factor: 49.962

3.  RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.

Authors:  P D Zamore; T Tuschl; P A Sharp; D P Bartel
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

4.  Total silencing by intron-spliced hairpin RNAs.

Authors:  N A Smith; S P Singh; M B Wang; P A Stoutjesdijk; A G Green; P M Waterhouse
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

5.  Heritable gene silencing in Drosophila using double-stranded RNA.

Authors:  J R Kennerdell; R W Carthew
Journal:  Nat Biotechnol       Date:  2000-08       Impact factor: 54.908

6.  Functional genomic analysis of C. elegans chromosome I by systematic RNA interference.

Authors:  A G Fraser; R S Kamath; P Zipperlen; M Martinez-Campos; M Sohrmann; J Ahringer
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

7.  TEMPERATURE-SENSITIVE MUTANTS OF BACTERIOPHAGE T4D: THEIR ISOLATION AND GENETIC CHARACTERIZATION.

Authors:  R S EDGAR; I LIELAUSIS
Journal:  Genetics       Date:  1964-04       Impact factor: 4.562

8.  Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways.

Authors:  J C Clemens; C A Worby; N Simonson-Leff; M Muda; T Maehama; B A Hemmings; J E Dixon
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

9.  Pseudosubstrate inhibition of protein kinase PKR by swine pox virus C8L gene product.

Authors:  M Kawagishi-Kobayashi; C Cao; J Lu; K Ozato; T E Dever
Journal:  Virology       Date:  2000-10-25       Impact factor: 3.616

10.  Selective reduction of dormant maternal mRNAs in mouse oocytes by RNA interference.

Authors:  P Svoboda; P Stein; H Hayashi; R M Schultz
Journal:  Development       Date:  2000-10       Impact factor: 6.868

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  150 in total

1.  Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells.

Authors:  Patrick J Paddison; Amy A Caudy; Emily Bernstein; Gregory J Hannon; Douglas S Conklin
Journal:  Genes Dev       Date:  2002-04-15       Impact factor: 11.361

2.  A DNA vector-based RNAi technology to suppress gene expression in mammalian cells.

Authors:  Guangchao Sui; Christina Soohoo; El Bachir Affar; Frédérique Gay; Yujiang Shi; William C Forrester; Yang Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

3.  Independent combinatorial effect of antisense oligonucleotides and RNAi-mediated specific inhibition of the recombinant rat P2X3 receptor.

Authors:  Maja Hemmings-Mieszczak; Gabriele Dorn; François J Natt; Jonathan Hall; William L Wishart
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

4.  Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo.

Authors:  Maarten Hoek; Bruce Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

5.  Inducible shRNA expression for application in a prostate cancer mouse model.

Authors:  Frank Czauderna; Ansgar Santel; Michael Hinz; Melanie Fechtner; Birgit Durieux; Gerald Fisch; Frauke Leenders; Wolfgang Arnold; Klaus Giese; Anke Klippel; Jörg Kaufmann
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

6.  Short RNA duplexes produced by hydrolysis with Escherichia coli RNase III mediate effective RNA interference in mammalian cells.

Authors:  Dun Yang; Frank Buchholz; Zhongdong Huang; Andrei Goga; Chih-Ying Chen; Frances M Brodsky; J Michael Bishop
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-02       Impact factor: 11.205

7.  Gene silencing using micro-RNA designed hairpins.

Authors:  Michael T McManus; Christian P Petersen; Brian B Haines; Jianzhu Chen; Phillip A Sharp
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

8.  RNAi functions in cultured mammalian neurons.

Authors:  Anna M Krichevsky; Kenneth S Kosik
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-21       Impact factor: 11.205

Review 9.  Molecular tools to elucidate factors regulating alcohol use.

Authors:  Marian L Logrip
Journal:  Alcohol       Date:  2018-03-20       Impact factor: 2.405

10.  Noncoding flavivirus RNA displays RNA interference suppressor activity in insect and Mammalian cells.

Authors:  Esther Schnettler; Mark G Sterken; Jason Y Leung; Stefan W Metz; Corinne Geertsema; Rob W Goldbach; Just M Vlak; Alain Kohl; Alexander A Khromykh; Gorben P Pijlman
Journal:  J Virol       Date:  2012-10-03       Impact factor: 5.103

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