Literature DB >> 26613499

Chemically Meaningful Atomic Charges That Reproduce the Electrostatic Potential in Periodic and Nonperiodic Materials.

Thomas A Manz1, David S Sholl1.   

Abstract

Net atomic charges (NACs) can be used both to understand the chemical states of atoms in a material as well as to represent the electrostatic potential, V, of the material outside its electron distribution. However, many existing definitions of NACs have limitations that prevent them from adequately fulfilling this dual purpose. Some charge methods are not applicable to periodic materials or are inaccurate for systems containing buried atoms, while others work for both periodic and nonperiodic materials containing buried atoms but give NACS that do not accurately reproduce V. We present a new approach, density derived electrostatic and chemical (DDEC) charges, that overcomes these limitations by simultaneously optimizing the NACs to be chemically meaningful and to reproduce V outside the electron distribution. This atoms-in-molecule method partitions the total electron density among atoms and uses a distributed multipole expansion to formally reproduce V exactly outside the electron distribution. We compare different methods for computing NACs for a broad range of materials that are periodic in zero, one, two, and three dimensions. The DDEC method consistently performs well for systems with and without buried atoms, including molecules, nonporous solids, solid surfaces, and porous solids like metal organic frameworks.

Entities:  

Year:  2010        PMID: 26613499     DOI: 10.1021/ct100125x

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  28 in total

1.  The role of water in the elastic properties of aluminosilicate zeolites: DFT investigation.

Authors:  Ilya A Bryukhanov; Andrey A Rybakov; Alexander V Larin; Dmitry N Trubnikov; Daniel P Vercauteren
Journal:  J Mol Model       Date:  2017-02-14       Impact factor: 1.810

2.  Analysis and visualization of energy densities. II. Insights from linear-response time-dependent density functional theory calculations.

Authors:  Zheng Pei; Junjie Yang; Jingheng Deng; Yuezhi Mao; Qin Wu; Zhibo Yang; Bin Wang; Christine M Aikens; Wanzhen Liang; Yihan Shao
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

3.  The role of molecular modelling and simulation in the discovery and deployment of metal-organic frameworks for gas storage and separation.

Authors:  Arni Sturluson; Melanie T Huynh; Alec R Kaija; Caleb Laird; Sunghyun Yoon; Feier Hou; Zhenxing Feng; Christopher E Wilmer; Yamil J Colón; Yongchul G Chung; Daniel W Siderius; Cory M Simon
Journal:  Mol Simul       Date:  2019       Impact factor: 2.178

4.  Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

Authors:  Ye Mei; Andrew C Simmonett; Frank C Pickard; Robert A DiStasio; Bernard R Brooks; Yihan Shao
Journal:  J Phys Chem A       Date:  2015-05-18       Impact factor: 2.781

5.  Hydration Free Energies in the FreeSolv Database Calculated with Polarized Iterative Hirshfeld Charges.

Authors:  Maximiliano Riquelme; Alejandro Lara; David L Mobley; Toon Verstraelen; Adelio R Matamala; Esteban Vöhringer-Martinez
Journal:  J Chem Inf Model       Date:  2018-08-31       Impact factor: 4.956

6.  Multi-Level Computational Screening of in Silico Designed MOFs for Efficient SO2 Capture.

Authors:  Hakan Demir; Seda Keskin
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-06-03       Impact factor: 4.177

Review 7.  From computational high-throughput screenings to the lab: taking metal-organic frameworks out of the computer.

Authors:  Aurelia Li; Rocio Bueno-Perez; David Madden; David Fairen-Jimenez
Journal:  Chem Sci       Date:  2022-06-16       Impact factor: 9.969

8.  In Silico Tuning of the Pore Surface Functionality in Al-MOFs for Trace CH3I Capture.

Authors:  Xiaoyu Wu; Linjiang Chen; Eric Jean Amigues; Ruiyao Wang; Zhongfu Pang; Lifeng Ding
Journal:  ACS Omega       Date:  2021-07-12

9.  New scaling relations to compute atom-in-material polarizabilities and dispersion coefficients: part 2. Linear-scaling computational algorithms and parallelization.

Authors:  Thomas A Manz; Taoyi Chen
Journal:  RSC Adv       Date:  2019-10-17       Impact factor: 4.036

10.  Performance-Based Screening of Porous Materials for Carbon Capture.

Authors:  Amir H Farmahini; Shreenath Krishnamurthy; Daniel Friedrich; Stefano Brandani; Lev Sarkisov
Journal:  Chem Rev       Date:  2021-08-10       Impact factor: 60.622

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