Literature DB >> 26606221

Assessment of the Performance of DFT and DFT-D Methods for Describing Distance Dependence of Hydrogen-Bonded Interactions.

Kanchana S Thanthiriwatte1, Edward G Hohenstein1, Lori A Burns1, C David Sherrill1.   

Abstract

Noncovalent interactions such as hydrogen bonds, van der Waals forces, and π-π interactions play important roles influencing the structure, stability, and dynamic properties of biomolecules including DNA and RNA base pairs. In an effort to better understand the fundamental physics of hydrogen bonding (H-bonding), we investigate the distance dependence of interaction energies in the prototype bimolecular complexes of formic acid, formamide, and formamidine. Potential energy curves along the H-bonding dissociation coordinate are examined both by establishing reference CCSD(T) interaction energies extrapolated to the complete basis set limit and by assessing the performance of the density functional methods B3LYP, PBE, PBE0, B970, PB86, M05-2X, and M06-2X and empirical dispersion corrected methods B3LYP-D3, PBE-D3, PBE0-D3, B970-D2, BP86-D3, and ωB97X-D, with basis sets 6-311++G(3df,3pd), aug-cc-pVDZ, and aug-cc-pVTZ. Although H-bonding interactions are dominated by electrostatics, it is necessary to properly account for dispersion interactions to obtain accurate energetics. In order to quantitatively probe the nature of hydrogen bonding interactions as a function of distance, we decompose the interaction energy curves into physically meaningful components with symmetry-adapted perturbation theory (SAPT). The SAPT results confirm that the contribution of dispersion and induction are significant at and near equilibrium, although electrostatics dominate. Among the DFT/DFT-D techniques, the best overall results are obtained utilizing counterpoise-corrected ωB97X-D with the aug-cc-pVDZ basis set.

Entities:  

Year:  2010        PMID: 26606221     DOI: 10.1021/ct100469b

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  30 in total

1.  The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Authors:  Wei Gao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  A new theoretical analysis of the cooperative effect in T-shaped hydrogen complexes of CnHm∙∙∙HCN∙∙∙HW with n = 2, m = 2 or 4, and W = F or CN.

Authors:  Boaz G Oliveira; Tamires F Costa; Regiane C M U Araújo
Journal:  J Mol Model       Date:  2013-05-31       Impact factor: 1.810

3.  The role of water in the elastic properties of aluminosilicate zeolites: DFT investigation.

Authors:  Ilya A Bryukhanov; Andrey A Rybakov; Alexander V Larin; Dmitry N Trubnikov; Daniel P Vercauteren
Journal:  J Mol Model       Date:  2017-02-14       Impact factor: 1.810

4.  How are hydrogen bonds modified by metal binding?

Authors:  Charlotte Husberg; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2013-03-31       Impact factor: 3.358

5.  Directional Dependence of Hydrogen Bonds: a Density-based Energy Decomposition Analysis and Its Implications on Force Field Development.

Authors:  Zhenyu Lu; Nengjie Zhou; Qin Wu; Yingkai Zhang
Journal:  J Chem Theory Comput       Date:  2011-12-13       Impact factor: 6.006

6.  Insights into the self-assembly steps of cyanuric acid toward rosette motifs: a DFT study.

Authors:  Andre N Petelski; Nélida M Peruchena; Silvana C Pamies; Gladis L Sosa
Journal:  J Mol Model       Date:  2017-08-14       Impact factor: 1.810

7.  Structure and electronic properties of azadirachtin.

Authors:  Elton A S de Castro; Daniel A B de Oliveira; Sergio A S Farias; Ricardo Gargano; João B L Martins
Journal:  J Mol Model       Date:  2014-02-09       Impact factor: 1.810

8.  How accurate are approximate quantum chemical methods at modelling solute-solvent interactions in solvated clusters?

Authors:  Junbo Chen; Bun Chan; Yihan Shao; Junming Ho
Journal:  Phys Chem Chem Phys       Date:  2020-02-19       Impact factor: 3.676

9.  On the correction of calculated vibrational frequencies for the effects of the counterions - α,ω-diamine dihydrochlorides.

Authors:  S M Fiuza; T M Silva; M P M Marques; L A E Batista de Carvalho; A M Amado
Journal:  J Mol Model       Date:  2015-09-19       Impact factor: 1.810

10.  Achieving High Ortho Selectivity in Aniline C-H Borylations by Modifying Boron Substituents.

Authors:  Milton R Smith; Ranjana Bisht; Chabush Haldar; Gajanan Pandey; Jonathan E Dannatt; Behnaz Ghaffari; Robert E Maleczka; Buddhadeb Chattopadhyay
Journal:  ACS Catal       Date:  2018-05-09       Impact factor: 13.084

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