Literature DB >> 32022044

How accurate are approximate quantum chemical methods at modelling solute-solvent interactions in solvated clusters?

Junbo Chen1, Bun Chan2, Yihan Shao3, Junming Ho1.   

Abstract

In this paper, the performance of a wide range of DFT methods is assessed for the calculation of interaction energies of thermal clusters of a solute in water. Three different charge states (neutral, proton transfer transition state and zwitterion) of glycine were solvated by 1 to 40 water molecules as sampled from molecular dynamics simulations. While some ab initio composite methods that employ insufficiently large basis sets incurred significant errors even for a cluster containing only 5 water molecules relative to the W1X-2 benchmark, the DLPNO-CCSD(T)/CBS and DSD-PBEP86 (triple zeta basis set) levels of theory predicted very accurate interaction energies. These levels of theory were used to benchmark the performance of 16 density functionals from different rungs of Jacob's Ladder. Of the Rung 4 functionals examined, the ωB97M-V and ωB97X-V functionals stood out for predicting absolute interaction energies in 40-water clusters with mean absolute deviations (MAD) ∼4 kJ mol-1. The B3LYP-D3(BJ) functional performed exceptionally well with a MAD ∼1.7 kJ mol-1 and is the overall best performing method. Calculations of relative interaction energies allow for cancellation of systematic errors, including basis set truncation and superposition errors, and the ωB97M-V and B3LYP-D3(BJ) double zeta basis set calculations yielded relative interaction energies that are within ∼3 kJ mol-1 of the benchmark. The ONIOM approximation provides another strategy for accelerating the calculation of accurate absolute interaction energies provided that the calculations have converged with respect to the size of the "high-level-layer".

Entities:  

Year:  2020        PMID: 32022044      PMCID: PMC7394230          DOI: 10.1039/c9cp06792b

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  83 in total

1.  W1X-1 and W1X-2: W1-Quality Accuracy with an Order of Magnitude Reduction in Computational Cost.

Authors:  Bun Chan; Leo Radom
Journal:  J Chem Theory Comput       Date:  2012-09-19       Impact factor: 6.006

2.  Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections.

Authors:  Jeng-Da Chai; Martin Head-Gordon
Journal:  Phys Chem Chem Phys       Date:  2008-09-29       Impact factor: 3.676

3.  Exploring solvent effects upon the Menshutkin reaction using a polarizable force field.

Authors:  Orlando Acevedo; William L Jorgensen
Journal:  J Phys Chem B       Date:  2010-07-01       Impact factor: 2.991

4.  ωB97X-V: a 10-parameter, range-separated hybrid, generalized gradient approximation density functional with nonlocal correlation, designed by a survival-of-the-fittest strategy.

Authors:  Narbe Mardirossian; Martin Head-Gordon
Journal:  Phys Chem Chem Phys       Date:  2014-01-16       Impact factor: 3.676

5.  ωB97M-V: A combinatorially optimized, range-separated hybrid, meta-GGA density functional with VV10 nonlocal correlation.

Authors:  Narbe Mardirossian; Martin Head-Gordon
Journal:  J Chem Phys       Date:  2016-06-07       Impact factor: 3.488

6.  Conventional and Explicitly Correlated ab Initio Benchmark Study on Water Clusters: Revision of the BEGDB and WATER27 Data Sets.

Authors:  Debashree Manna; Manoj K Kesharwani; Nitai Sylvetsky; Jan M L Martin
Journal:  J Chem Theory Comput       Date:  2017-06-06       Impact factor: 6.006

7.  DSD-PBEP86: in search of the best double-hybrid DFT with spin-component scaled MP2 and dispersion corrections.

Authors:  Sebastian Kozuch; Jan M L Martin
Journal:  Phys Chem Chem Phys       Date:  2011-10-12       Impact factor: 3.676

8.  Reaction intermediates during operando electrocatalysis identified from full solvent quantum mechanics molecular dynamics.

Authors:  Tao Cheng; Alessandro Fortunelli; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-13       Impact factor: 11.205

9.  Obtaining Good Performance With Triple-ζ-Type Basis Sets in Double-Hybrid Density Functional Theory Procedures.

Authors:  Bun Chan; Leo Radom
Journal:  J Chem Theory Comput       Date:  2011-08-23       Impact factor: 6.006

10.  Electronic structure and solvation of copper and silver ions: a theoretical picture of a model aqueous redox reaction.

Authors:  Jochen Blumberger; Leonardo Bernasconi; Ivano Tavernelli; Rodolphe Vuilleumier; Michiel Sprik
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

View more
  3 in total

1.  Data-Driven Strategies for Accelerated Materials Design.

Authors:  Robert Pollice; Gabriel Dos Passos Gomes; Matteo Aldeghi; Riley J Hickman; Mario Krenn; Cyrille Lavigne; Michael Lindner-D'Addario; AkshatKumar Nigam; Cher Tian Ser; Zhenpeng Yao; Alán Aspuru-Guzik
Journal:  Acc Chem Res       Date:  2021-02-02       Impact factor: 22.384

2.  Ionization Energies and Redox Potentials of Hydrated Transition Metal Ions: Evaluation of Domain-Based Local Pair Natural Orbital Coupled Cluster Approaches.

Authors:  Sinjini Bhattacharjee; Miho Isegawa; Miquel Garcia-Ratés; Frank Neese; Dimitrios A Pantazis
Journal:  J Chem Theory Comput       Date:  2022-02-22       Impact factor: 6.006

3.  Quantum Chemical Microsolvation by Automated Water Placement.

Authors:  Miguel Steiner; Tanja Holzknecht; Michael Schauperl; Maren Podewitz
Journal:  Molecules       Date:  2021-03-23       Impact factor: 4.411

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.