| Literature DB >> 26600159 |
Åsa Johansson1, Jenny Alfredsson2,3, Niclas Eriksson4, Lars Wallentin4, Agneta Siegbahn4,2,3.
Abstract
INTRODUCTION: Acute coronary syndrome (ACS) is a major cause of mortality worldwide. We have previously shown that increased interleukin-10 (IL-10) levels are associated with poor outcome in ACS patients.Entities:
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Year: 2015 PMID: 26600159 PMCID: PMC4658192 DOI: 10.1371/journal.pone.0142518
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of the study cohort.
| Non-ST ACS patients (N = 2864) | Controls (N = 408) | |||
|---|---|---|---|---|
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| 67.16 | 59.1–74.01 | 65 | 59–70 |
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| 26.28 | 24.26–28.73 | 25.4 | 23.17–27.4 |
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| |
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| 2016 | 70.4 | 272 | 66.7 |
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| 980 | 33.6 | 146 | 35.8 |
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| 779 | 27.2 | NA | |
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| 357 | 12.5 | NA | |
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| 1331 | 47.6 | NA | |
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| 225 | 7.9 | NA | |
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| 472 | 18.1 | NA | |
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| 590 | 20.8 | NA | |
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| 652 | 25.0 | NA | |
This study cohort include genotyped FRISC-II patients and controls with measured IL-10 levels.
aNA–Information not available.
Variables influencing IL-10 levels.
| Estimate | SE |
| |
|---|---|---|---|
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| 0.17 | 0.040 | 2.3E-05 |
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| 0.011 | 0.0019 | 4.0E-08 |
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| 0.0016 | 0.039 | 0.97 |
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| -0.020 | 0.046 | 0.67 |
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| 0.054 | 0.037 | 0.14 |
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| -0.12 | 0.058 | 0.042 |
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| 0.040 | 0.043 | 0.35 |
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| 0.18 | 0.055 | 0.0010 |
Multiple linear regression using possible precision and confounding variables as explanatory variables and IL-10 as response variable for the association study. The table shows the regression coefficient (Estimate), the standard error (SE) and the P-value (P) for each variable.
Statistics summary of biomarkers in the ACS patients and controls.
| Patients | Controls | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Variable | N | Min | Max | Median | Mean | N | Min | Max | Median | Mean |
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| 2864 | 0 | 105.8 | 1.08 | 1.6 | 408 | 0.5 | 104.5 | 0.77 | 1.2 | 3.4 × 10−19 |
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| 757 | 28 | 644 | 161 | 178.4 | 402 | 0 | 588 | 124 | 139.4 | 6.4 × 10−18 |
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| 502 | 26 | 312 | 154 | 153.7 | 409 | 56 | 276 | 130 | 132.7 | 1.5 × 10−14 |
The table shows the summary statistics for three biomarkers in the ACS patients and controls. For each sub-cohort, the number of individuals with the biomarker measured is included together with the minimum, maximum, median and mean value for each biomarker. The last columns who the P-value for the difference in biomarker levels between ACS patients and controlled, estimated by Kruskal-Wallis rank-sum test.
Fig 1Manhattan plot for the genome-wide association analyses in ACS patients (A) and controls (B).
For each SNP, the–log10 (P-value) is plotted against the order on the chromosomes starting with 1–22, Y and X, separated by different colors. The dashed line indicates the threshold for statistical significance (Bonferroni adjusted P = 0.05).
Genome-wide significant SNPs associated with a variation in IL-10 levels.
| Cohort | CardioMetaboChipID | SNP name | Chr | Position (Build 38) | Allele | Freq | N | Beta | SE beta |
| HWE | Call rate |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Patients | chr9:135125967 | rs8176702 | 9 | 133260743 | A | 0.376 | 2857 | 0.13 | 0.026 | 3.82 × 10−7 | 0.87 | 0.9976 |
| Patients | chr9:135126784 | rs2073826 | 9 | 133261560 | A | 0.392 | 2864 | 0.13 | 0.026 | 4.36 × 10−7 | 0.81 | 1 |
| Patients | chr9:135126886 | rs687621 | 9 | 133261662 | G | 0.381 | 2863 | -0.16 | -0.026 | 7.89 × 10−10 | 0.48 | 0.9997 |
| Patients | chr9:135126927 | rs687289 | 9 | 133261703 | A | 0.381 | 2864 | -0.16 | -0.026 | 1.00 × 10−9 | 0.50 | 1 |
| Patients | rs2073827 | rs2073827 | 9 | 133261730 | G | 0.392 | 2862 | 0.13 | 0.026 | 5.74 × 10−7 | 0.81 | 0.9993 |
| Patients | chr9:135129086 | rs657152 | 9 | 133263862 | A | 0.398 | 2864 | -0.16 | -0.026 | 9.25 × 10−10 | 0.44 | 1 |
| Patients | rs8176682 | rs8176682 | 9 | 133263894 | A | 0.376 | 2864 | 0.13 | 0.026 | 2.50 × 10−7 | 0.72 | 1 |
| Patients | chr9:135129575 | rs8176681 | 9 | 133264351 | G | 0.393 | 2864 | 0.13 | 0.026 | 3.84 × 10−7 | 0.72 | 1 |
| Patients | chr9:135132024 | rs514659 | 9 | 133266790 | C | 0.381 | 2864 | -0.16 | -0.026 | 7.56 × 10−10 | 0.45 | 1 |
| Patients | chr9:135132038 | rs644234 | 9 | 133266804 | C | 0.399 | 2864 | -0.16 | -0.026 | 8.03 × 10−10 | 0.41 | 1 |
| Patients | chr9:135132176 | rs643434 | 9 | 133266942 | A | 0.399 | 2863 | -0.16 | -0.026 | 8.34 × 10−10 | 0.41 | 0.9997 |
| Patients | chr9:135133193 | rs545971 | 9 | 133267960 | A | 0.381 | 2864 | -0.16 | -0.026 | 5.95 × 10−10 | 0.48 | 1 |
| Patients | chr9:135133263 | rs612169 | 9 | 133268030 | G | 0.381 | 2864 | -0.16 | -0.026 | 5.95 × 10−10 | 0.48 | 1 |
| Patients | chr9:135135292 | rs582118 | 9 | 133270061 | G | 0.381 | 2864 | -0.16 | -0.026 | 5.95 × 10−10 | 0.48 | 1 |
| Patients | chr9:135135305 | rs582094 | 9 | 133270074 | A | 0.381 | 2864 | -0.16 | -0.026 | 5.95 × 10−10 | 0.48 | 1 |
| Patients | chr9:135135795 | rs2769071 | 9 | 133270565 | G | 0.381 | 2864 | -0.16 | -0.026 | 5.95 × 10−10 | 0.48 | 1 |
| Patients | chr9:135136048 | rs676457 | 9 | 133270797 | A | 0.382 | 2864 | -0.16 | -0.026 | 4.44 × 10−10 | 0.58 | 1 |
| Patients | chr9:135137116 | rs8176649 | 9 | 133271880 | A | 0.375 | 2864 | 0.14 | 0.026 | 1.63 × 10−7 | 0.75 | 1 |
| Patients | chr9:135138917 | rs8176646 | 9 | NA | C | 0.398 | 2864 | -0.16 | -0.026 | 8.79 × 10−10 | 0.44 | 1 |
| Patients | chr9:135138919 | rs8176645 | 9 | 133273682 | A | 0.398 | 2860 | -0.16 | -0.026 | 1.43 × 10−9 | 0.39 | 0.9986 |
| Patients | rs505922 | rs505922 | 9 | 133273813 | G | 0.380 | 2863 | -0.16 | -0.026 | 7.57 × 10−10 | 0.50 | 0.9997 |
| Patients | chr9:135139321 | rs529565 | 9 | 133274084 | G | 0.380 | 2864 | -0.16 | -0.026 | 9.13 × 10−10 | 0.50 | 1 |
| Controls | rs11961593 | rs11961593 | 6 | 165750649 | A | 0.067 | 408 | 0.64 | 0.12 | 1.80 × 10−7 | 0.41 | 1 |
All genome wide significant results from GWAS in ACS patients and controls separately. The table includes basic information on the original SNP name on the CardioMetaboChip, The RS number (SNP name), chromosome and position of the SNP. In addition, the table shows which allele the effect (Beta) was estimated for, the frequency of that allele and the effect (Beta) the allele have on IL-10 levels with corresponding standard error (SE) and P-value. The table also includes basic QC values for the SNPs including number of individuals successfully genotyped, SNP call rate, and Hardy-Weinberg equilibrium P-value (HWE P).
Odds ratio for disease outcome in ACS patients with different IL-10 levels or ABO alleles.
| Marker | Myocardial infarction after 5 years | Cardiovascular death after 5 years | Any cause of death after 9 years | Any cause of death or myocardial infarction after 5 years | ||||
|---|---|---|---|---|---|---|---|---|
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| IL-10 (1 SD | 1.16 [1.04–1.29] | 0.0081 | 1.13 [0.97–1.32] | 0.13 | 1.26 [1.13–1.39] | 1.4 × 10−05 | 1.23 [1.11–1.35] | 4.9 × 10−05 |
| rs676457 | 1.26 [1.08–1.47] | 0.0028 | 1.28 [1.02–1.59] | 0.029 | 1.29 [1.11–1.5] | 0.00067 | 1.24 [1.08–1.42] | 0.0025 |
The table shows the odds ratio that is associated with a 1 standard deviation increase in IL-10 levels and the odds ration that is associated with having one extra copy of the major allele of rs676457. The odds ratios, the 95% confidence intervals, and corresponding P-values was estimated for three different endpoints after five our nine years in the ACS cohort.
a OR–odds ratio.
b CI–confidence interval.
c SD–standard deviation.
d The major allele in rs676457 tags the O antigen and is associated with increased IL-10 levels.
Frequencies of haplotypes representing the different ABO antigen alleles in ACS patients and controls.
| ABO allele | SNPs | Frequency | |||
|---|---|---|---|---|---|
| rs8176746 | rs687289 | rs507666 | Patients | Controls | |
| A1 | C | A | A | 0.223 | 0.223 |
| A2 | C | A | G | 0.084 | 0.091 |
| B | A | A | G | 0.074 | 0.083 |
| O | C | G | G | 0.618 | 0.601 |
The table shows the combination of alleles at three different SNPs that represent the four major ABO antigens. The frequency for inferred antigen is shown for ACS patients and controls separately. No difference in frequency were seen between ACS patients and controls for any of the antigens (P>0.05).
Haplotype score statistics for the ABO antigens and all biomarkers using an additive model.
| ACS patients | Controls | |
|---|---|---|
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| IL-10 | 1.7 × 10−8 | 0.70 |
| VWF | 9.2 × 10−13 | 1.2 × 10−15 |
| CD40 ligand | 0.53 | 0.18 |
| IL-6 | 0.06 | 0.40 |
| Fibrinogen | 0.46 | 0.39 |
| IL-18 | 0.36 | 0.85 |
| sTF | 0.00086 | 1.03 × 10−05 |
The table shows the association between variation in the level of the biomarkers and different ABO antigens in ACS patients and controls separately.
Fig 2Path analyses in ACS patients (A) and controls (B).
Single-headed arrows are direct associations represented by the regression coefficient from multiple regressions. Double-headed arrows above the variables represent residual variance (for endogenous variables) or variance (for exogenous variables). Double-headed arrows between two variables are indirect associations represented by the correlation coefficient. VWF and IL-10 are both standardized. Only significant (P<0.05) associations are shown in the figure. Note that age, as a responding variable in the ACS patients, should be regarded as the age of onset.
Coefficients and direction of effects from the path analyses.
| Variable 1 | Direction | Variable 2 | Patients | Controls | |||
|---|---|---|---|---|---|---|---|
| Coefficients from path analyses | Estimate |
| Estimate |
| |||
| Regression | IL-10 | <—- | ABO (A, B, AB) | -0.23 | 2.2 × 10−11 | 0.068 | 4.5 × 10−1 |
| Regression | VWF | <—- | ABO (A, B, AB) | 0.75 | 8.0 × 10−111 | 0.85 | 4.2 × 10−23 |
| Regression | Deatha | <—- | IL-10 | 0.038 | 4.9 × 10−7 | NA | NA |
| Regression | Age | <—- | ABO (A, B, AB) | -1.01 | 4.6 × 10−3 | 0.55 | 4.5 × 10−1 |
| Regression | Age | <—- | Sex (Males) | -3.81 | 2.6 × 10−22 | -3.46 | 6.5 × 10−6 |
| Regression | IL-10 | <—- | Age | 0.012 | 1.7 × 10−11 | 0.031 | 3.9 × 10−7 |
| Regression | VWF | <—- | Age | 0.025 | 3.4 × 10−48 | 0.024 | 2.5 × 10−5 |
| Regression | IL-10 | <—- | Sex | 0.19 | 7.5 × 10−7 | 0.253 | 8.7 × 10−3 |
| Regression | Death | <—- | Age | 0.013 | 4.1 × 10−75 | NA | NA |
| Regression | Death | <—- | Sex (Males) | 0.037 | 2.1 × 10−2 | NA | NA |
| Correlation | IL-10 | <—> | VWF | 0.14 | 6.7 × 10−19 | 0.11 | 4.9 × 10−3 |
The table shows the main results from the path analyses with regression or correlation coefficients (estimates) for ACS patient and controls separately and respective P-value. Only variables with a P-value < 0.05 are included.
a Death is the all-cause mortality after 9 years.
b Controls were pair wisely matched (regarding sex and age) with a subset of the ACS patients.