Literature DB >> 26599421

Protein-Observed Fluorine NMR: A Bioorthogonal Approach for Small Molecule Discovery.

Keith E Arntson1, William C K Pomerantz1.   

Abstract

The (19)F isotope is 100% naturally abundant and is the second most sensitive and stable NMR-active nucleus. Unlike the ubiquitous hydrogen atom, fluorine is nearly absent in biological systems, making it a unique bioorthogonal atom for probing molecular interactions in biology. Over 73 fluorinated proteins have been studied by (19)F NMR since the seminal studies of Hull and Sykes in 1974. With advances in cryoprobe production and fluorinated amino acid incorporation strategies, protein-based (19)F NMR offers opportunities to the medicinal chemist for characterizing and ultimately discovering new small molecule protein ligands. This review will highlight new advances using (19)F NMR for characterizing small molecule interactions with both small and large proteins as well as detailing NMR resonance assignment challenges and amino acid incorporation approaches.

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Year:  2015        PMID: 26599421     DOI: 10.1021/acs.jmedchem.5b01447

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  40 in total

1.  Specific Acetylation Patterns of H2A.Z Form Transient Interactions with the BPTF Bromodomain.

Authors:  Gabriella T Perell; Neeraj K Mishra; Babu Sudhamalla; Peter D Ycas; Kabirul Islam; William C K Pomerantz
Journal:  Biochemistry       Date:  2017-08-23       Impact factor: 3.162

2.  2-Fluorotyrosine is a valuable but understudied amino acid for protein-observed 19F NMR.

Authors:  Peter D Ycas; Nicole Wagner; Noelle M Olsen; Riqiang Fu; William C K Pomerantz
Journal:  J Biomol NMR       Date:  2019-11-23       Impact factor: 2.835

3.  Feasibility of trifluoromethyl TROSY NMR at high magnetic fields.

Authors:  Brittney A Klein; Brian D Sykes
Journal:  J Biomol NMR       Date:  2019-07-02       Impact factor: 2.835

4.  Fragment Screening by NMR.

Authors:  Ben J Davis
Journal:  Methods Mol Biol       Date:  2021

5.  Protein 19F-labeling using transglutaminase for the NMR study of intermolecular interactions.

Authors:  Yoshikazu Hattori; David Heidenreich; Yuki Ono; Toshihiko Sugiki; Kei-Ichi Yokoyama; Ei-Ichiro Suzuki; Toshimichi Fujiwara; Chojiro Kojima
Journal:  J Biomol NMR       Date:  2017-07-29       Impact factor: 2.835

6.  Protein-observed (19)F-NMR for fragment screening, affinity quantification and druggability assessment.

Authors:  Clifford T Gee; Keith E Arntson; Andrew K Urick; Neeraj K Mishra; Laura M L Hawk; Andrea J Wisniewski; William C K Pomerantz
Journal:  Nat Protoc       Date:  2016-07-14       Impact factor: 13.491

7.  Dual Labeling of the CBP/p300 KIX Domain for 19 F NMR Leads to Identification of a New Small-Molecule Binding Site.

Authors:  Clifford T Gee; Keith E Arntson; Edward J Koleski; Rachel Lynn Staebell; William C K Pomerantz
Journal:  Chembiochem       Date:  2018-04-06       Impact factor: 3.164

8.  Rapid Quantification of Protein-Ligand Binding via 19F NMR Lineshape Analysis.

Authors:  Samantha S Stadmiller; Jhoan S Aguilar; Christopher A Waudby; Gary J Pielak
Journal:  Biophys J       Date:  2020-04-15       Impact factor: 4.033

9.  Trimethylsilyl tag for probing protein-ligand interactions by NMR.

Authors:  Walter Becker; Luke A Adams; Bim Graham; Gabriel E Wagner; Klaus Zangger; Gottfried Otting; Christoph Nitsche
Journal:  J Biomol NMR       Date:  2018-03-21       Impact factor: 2.835

10.  Protein-Observed Fluorine NMR Is a Complementary Ligand Discovery Method to 1H CPMG Ligand-Observed NMR.

Authors:  Andrew K Urick; Luis Pablo Calle; Juan F Espinosa; Haitao Hu; William C K Pomerantz
Journal:  ACS Chem Biol       Date:  2016-10-05       Impact factor: 5.100

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