Literature DB >> 29564580

Trimethylsilyl tag for probing protein-ligand interactions by NMR.

Walter Becker1,2, Luke A Adams3, Bim Graham3, Gabriel E Wagner4, Klaus Zangger2, Gottfried Otting1, Christoph Nitsche5.   

Abstract

Protein-ligand titrations can readily be monitored with a trimethylsilyl (TMS) tag. Owing to the intensity, narrow line shape and unique chemical shift of a TMS group, dissociation constants can be determined from straightforward 1D 1H-NMR spectra not only in the fast but also in the slow exchange limit. The tag is easily attached to cysteine residues and a sensitive reporter of ligand binding also at sites where it does not interfere with ligand binding or catalytic efficiency of the target protein. Its utility is demonstrated for the Zika virus NS2B-NS3 protease and the human prolyl isomerase FK506 binding protein.

Entities:  

Keywords:  Dissociation constant; Lead discovery; Protein–ligand interactions; Slow exchange; Trimethylsilyl group

Mesh:

Substances:

Year:  2018        PMID: 29564580     DOI: 10.1007/s10858-018-0173-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

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Authors:  C Neylon; S E Brown; A V Kralicek; C S Miles; C A Love; N E Dixon
Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

2.  Binding of low molecular weight inhibitors promotes large conformational changes in the dengue virus NS2B-NS3 protease: fold analysis by pseudocontact shifts.

Authors:  Laura de la Cruz; Thi Hoang Duong Nguyen; Kiyoshi Ozawa; James Shin; Bim Graham; Thomas Huber; Gottfried Otting
Journal:  J Am Chem Soc       Date:  2011-11-09       Impact factor: 15.419

3.  Biased signaling pathways in β2-adrenergic receptor characterized by 19F-NMR.

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4.  Sensitive NMR Approach for Determining the Binding Mode of Tightly Binding Ligand Molecules to Protein Targets.

Authors:  Wan-Na Chen; Christoph Nitsche; Kala Bharath Pilla; Bim Graham; Thomas Huber; Christian D Klein; Gottfried Otting
Journal:  J Am Chem Soc       Date:  2016-03-24       Impact factor: 15.419

Review 5.  Broad-spectrum agents for flaviviral infections: dengue, Zika and beyond.

Authors:  Veaceslav Boldescu; Mira A M Behnam; Nikos Vasilakis; Christian D Klein
Journal:  Nat Rev Drug Discov       Date:  2017-05-05       Impact factor: 84.694

6.  A cytosolic binding protein for the immunosuppressant FK506 has peptidyl-prolyl isomerase activity but is distinct from cyclophilin.

Authors:  J J Siekierka; S H Hung; M Poe; C S Lin; N H Sigal
Journal:  Nature       Date:  1989-10-26       Impact factor: 49.962

Review 7.  Protein-Observed Fluorine NMR: A Bioorthogonal Approach for Small Molecule Discovery.

Authors:  Keith E Arntson; William C K Pomerantz
Journal:  J Med Chem       Date:  2015-12-14       Impact factor: 7.446

8.  In vivo incorporation of unnatural amino acids to probe structure, dynamics, and ligand binding in a large protein by nuclear magnetic resonance spectroscopy.

Authors:  Susan E Cellitti; David H Jones; Leanna Lagpacan; Xueshi Hao; Qiong Zhang; Huiyong Hu; Scott M Brittain; Achim Brinker; Jeremy Caldwell; Badry Bursulaya; Glen Spraggon; Ansgar Brock; Youngha Ryu; Tetsuo Uno; Peter G Schultz; Bernhard H Geierstanger
Journal:  J Am Chem Soc       Date:  2008-06-25       Impact factor: 15.419

9.  Genetically encoded amino acids with tert-butyl and trimethylsilyl groups for site-selective studies of proteins by NMR spectroscopy.

Authors:  Choy Theng Loh; Luke A Adams; Bim Graham; Gottfried Otting
Journal:  J Biomol NMR       Date:  2017-12-02       Impact factor: 2.835

10.  A conformational switch high-throughput screening assay and allosteric inhibition of the flavivirus NS2B-NS3 protease.

Authors:  Matthew Brecher; Zhong Li; Binbin Liu; Jing Zhang; Cheri A Koetzner; Adham Alifarag; Susan A Jones; Qishan Lin; Laura D Kramer; Hongmin Li
Journal:  PLoS Pathog       Date:  2017-05-25       Impact factor: 7.464

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  2 in total

1.  Evaluation of the tert-butyl group as a probe for NMR studies of macromolecular complexes.

Authors:  Sofia Bali; Jaime Guerrero; Jared Smothers; Charis Springhower; Rashmi Voleti; Gerardo A Acosta; Kyle D Brewer; Fernando Albericio; Josep Rizo
Journal:  J Biomol NMR       Date:  2021-09-09       Impact factor: 2.582

Review 2.  Insights into Structures and Dynamics of Flavivirus Proteases from NMR Studies.

Authors:  Qingxin Li; CongBao Kang
Journal:  Int J Mol Sci       Date:  2020-04-05       Impact factor: 5.923

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