Literature DB >> 26597575

Evolution and Biological Roles of Alternative 3'UTRs.

Christine Mayr1.   

Abstract

More than half of human genes use alternative cleavage and polyadenylation to generate alternative 3' untranslated region (3'UTR) isoforms. Most efforts have focused on transcriptome-wide mapping of alternative 3'UTRs and on the question of how 3'UTR isoform ratios may be regulated. However, it remains less clear why alternative 3'UTRs have evolved and what biological roles they play. This review summarizes our current knowledge of the functional roles of alternative 3'UTRs, including mRNA localization, mRNA stability, and translational efficiency. Recent work suggests that alternative 3'UTRs may also enable the formation of protein-protein interactions to regulate protein localization or to diversify protein functions. These recent findings open an exciting research direction for the investigation of new biological roles of alternative 3'UTRs.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  3′UTR; RNA granule; RNA-binding protein; alternative polyadenylation; diversification of protein functions; multifunctionality; noncoding RNA; post-transcriptional gene regulation; protein abundance; protein localization; protein–protein interactions

Mesh:

Substances:

Year:  2015        PMID: 26597575      PMCID: PMC4955613          DOI: 10.1016/j.tcb.2015.10.012

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  106 in total

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6.  CPEB1 coordinates alternative 3'-UTR formation with translational regulation.

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Authors:  Bin Tian; Jun Hu; Haibo Zhang; Carol S Lutz
Journal:  Nucleic Acids Res       Date:  2005-01-12       Impact factor: 16.971

9.  Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size.

Authors:  Jingshan Zhang; Sergei Maslov; Eugene I Shakhnovich
Journal:  Mol Syst Biol       Date:  2008-08-05       Impact factor: 11.429

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Authors:  Vicent Pelechano; Wu Wei; Lars M Steinmetz
Journal:  Nature       Date:  2013-04-24       Impact factor: 49.962

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  116 in total

1.  AU-rich element-mediated mRNA decay via the butyrate response factor 1 controls cellular levels of polyadenylated replication-dependent histone mRNAs.

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Review 2.  Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.

Authors:  Aparna Kishor; Sarah E Fritz; J Robert Hogg
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-26       Impact factor: 9.957

Review 3.  Translational Control in Cancer.

Authors:  Nathaniel Robichaud; Nahum Sonenberg; Davide Ruggero; Robert J Schneider
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

4.  Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive.

Authors:  Chuan Xu; Jianzhi Zhang
Journal:  Cell Syst       Date:  2018-06-06       Impact factor: 10.304

5.  DeepPASTA: deep neural network based polyadenylation site analysis.

Authors:  Ashraful Arefeen; Xinshu Xiao; Tao Jiang
Journal:  Bioinformatics       Date:  2019-11-01       Impact factor: 6.937

6.  Recurrent rewiring and emergence of RNA regulatory networks.

Authors:  Daniel Wilinski; Natascha Buter; Andrew D Klocko; Christopher P Lapointe; Eric U Selker; Audrey P Gasch; Marvin Wickens
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

7.  General rules for functional microRNA targeting.

Authors:  Doyeon Kim; You Me Sung; Jinman Park; Sukjun Kim; Jongkyu Kim; Junhee Park; Haeok Ha; Jung Yoon Bae; SoHui Kim; Daehyun Baek
Journal:  Nat Genet       Date:  2016-10-24       Impact factor: 38.330

8.  TAPAS: tool for alternative polyadenylation site analysis.

Authors:  Ashraful Arefeen; Juntao Liu; Xinshu Xiao; Tao Jiang
Journal:  Bioinformatics       Date:  2018-08-01       Impact factor: 6.937

9.  Widespread Translational Remodeling during Human Neuronal Differentiation.

Authors:  John D Blair; Dirk Hockemeyer; Jennifer A Doudna; Helen S Bateup; Stephen N Floor
Journal:  Cell Rep       Date:  2017-11-14       Impact factor: 9.423

10.  Transforming growth factor β1 alters the 3'-UTR of mRNA to promote lung fibrosis.

Authors:  Junsuk Ko; Tingting Mills; Jingjing Huang; Ning-Yuan Chen; Tinne C J Mertens; Scott D Collum; Garam Lee; Yu Xiang; Leng Han; Yang Zhou; Chun Geun Lee; Jack A Elias; Soma S K Jyothula; Keshava Rajagopal; Harry Karmouty-Quintana; Michael R Blackburn
Journal:  J Biol Chem       Date:  2019-09-05       Impact factor: 5.157

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