Literature DB >> 26595531

Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis.

Timothy P Cleland, Elena R Schroeter, Leonid Zamdborg1, Wenxia Zheng, Ji Eun Lee1,2, John C Tran3, Marshall Bern4, Michael B Duncan5,6, Valerie S Lebleu5,6,7, Dorothy R Ahlf3, Paul M Thomas3, Raghu Kalluri5,6,7,8, Neil L Kelleher3, Mary H Schweitzer9.   

Abstract

Structures similar to blood vessels in location, morphology, flexibility, and transparency have been recovered after demineralization of multiple dinosaur cortical bone fragments from multiple specimens, some of which are as old as 80 Ma. These structures were hypothesized to be either endogenous to the bone (i.e., of vascular origin) or the result of biofilm colonizing the empty osteonal network after degradation of original organic components. Here, we test the hypothesis that these structures are endogenous and thus retain proteins in common with extant archosaur blood vessels that can be detected with high-resolution mass spectrometry and confirmed by immunofluorescence. Two lines of evidence support this hypothesis. First, peptide sequencing of Brachylophosaurus canadensis blood vessel extracts is consistent with peptides comprising extant archosaurian blood vessels and is not consistent with a bacterial, cellular slime mold, or fungal origin. Second, proteins identified by mass spectrometry can be localized to the tissues using antibodies specific to these proteins, validating their identity. Data are available via ProteomeXchange with identifier PXD001738.

Entities:  

Keywords:  Brachylophosaurus canadensis; actin; blood vessels; cytoskeleton; dinosaur; myosin; preservation; taphonomy; tropomyosin; tubulin

Mesh:

Substances:

Year:  2015        PMID: 26595531      PMCID: PMC4768904          DOI: 10.1021/acs.jproteome.5b00675

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  39 in total

1.  Mapping the growth of fungal hyphae: orthogonal cell wall expansion during tip growth and the role of turgor.

Authors:  S Bartnicki-Garcia; C E Bracker; G Gierz; R López-Franco; H Lu
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

2.  Identification of immunoreactive material in mammoth fossils.

Authors:  Mary Schweitzer; Christopher L Hill; John M Asara; William S Lane; Seth H Pincus
Journal:  J Mol Evol       Date:  2002-12       Impact factor: 2.395

3.  PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.

Authors:  Bin Ma; Kaizhong Zhang; Christopher Hendrie; Chengzhi Liang; Ming Li; Amanda Doherty-Kirby; Gilles Lajoie
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

4.  Variation in osteocytes morphology vs bone type in turtle shell and their exceptional preservation from the Jurassic to the present.

Authors:  Edwin A Cadena; Mary H Schweitzer
Journal:  Bone       Date:  2012-05-11       Impact factor: 4.398

5.  Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins.

Authors:  Enrico Cappellini; Lars J Jensen; Damian Szklarczyk; Aurélien Ginolhac; Rute A R da Fonseca; Thomas W Stafford; Steven R Holen; Matthew J Collins; Ludovic Orlando; Eske Willerslev; M Thomas P Gilbert; Jesper V Olsen
Journal:  J Proteome Res       Date:  2011-12-14       Impact factor: 4.466

6.  Glutamine deamidation: an indicator of antiquity, or preservational quality?

Authors:  Elena R Schroeter; Timothy P Cleland
Journal:  Rapid Commun Mass Spectrom       Date:  2016-01-30       Impact factor: 2.419

Review 7.  The evolution of the cytoskeleton.

Authors:  Bill Wickstead; Keith Gull
Journal:  J Cell Biol       Date:  2011-08-22       Impact factor: 10.539

8.  Empirical evaluation of bone extraction protocols.

Authors:  Timothy P Cleland; Kristyn Voegele; Mary H Schweitzer
Journal:  PLoS One       Date:  2012-02-14       Impact factor: 3.240

9.  Fibres and cellular structures preserved in 75-million-year-old dinosaur specimens.

Authors:  Sergio Bertazzo; Susannah C R Maidment; Charalambos Kallepitis; Sarah Fearn; Molly M Stevens; Hai-nan Xie
Journal:  Nat Commun       Date:  2015-06-09       Impact factor: 14.919

10.  Proteome degradation in fossils: investigating the longevity of protein survival in ancient bone.

Authors:  Caroline Wadsworth; Mike Buckley
Journal:  Rapid Commun Mass Spectrom       Date:  2014-03-30       Impact factor: 2.419

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  21 in total

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Authors:  Timothy P Cleland; Elena R Schroeter; Robert S Feranec; Deepak Vashishth
Journal:  Proc Biol Sci       Date:  2016-06-15       Impact factor: 5.349

2.  Identification of proteins from 4200-year-old skin and muscle tissue biopsies from ancient Egyptian mummies of the first intermediate period shows evidence of acute inflammation and severe immune response.

Authors:  Jana Jones; Mehdi Mirzaei; Prathiba Ravishankar; Dylan Xavier; Do Seon Lim; Dong Hoon Shin; Raffaella Bianucci; Paul A Haynes
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3.  Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America.

Authors:  Renxing Liang; Maggie C Y Lau; Evan T Saitta; Zachary K Garvin; Tullis C Onstott
Journal:  Environ Microbiome       Date:  2020-03-19

4.  Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein.

Authors:  Elena R Schroeter; Caroline J DeHart; Timothy P Cleland; Wenxia Zheng; Paul M Thomas; Neil L Kelleher; Marshall Bern; Mary H Schweitzer
Journal:  J Proteome Res       Date:  2017-01-23       Impact factor: 4.466

5.  Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities.

Authors:  Evan T Saitta; Renxing Liang; Maggie Cy Lau; Caleb M Brown; Nicholas R Longrich; Thomas G Kaye; Ben J Novak; Steven L Salzberg; Mark A Norell; Geoffrey D Abbott; Marc R Dickinson; Jakob Vinther; Ian D Bull; Richard A Brooker; Peter Martin; Paul Donohoe; Timothy Dj Knowles; Kirsty Eh Penkman; Tullis Onstott
Journal:  Elife       Date:  2019-06-18       Impact factor: 8.140

Review 6.  Paleoproteomics.

Authors:  Christina Warinner; Kristine Korzow Richter; Matthew J Collins
Journal:  Chem Rev       Date:  2022-07-15       Impact factor: 72.087

7.  Protein sequences bound to mineral surfaces persist into deep time.

Authors:  Beatrice Demarchi; Shaun Hall; Teresa Roncal-Herrero; Colin L Freeman; Jos Woolley; Molly K Crisp; Julie Wilson; Anna Fotakis; Roman Fischer; Benedikt M Kessler; Rosa Rakownikow Jersie-Christensen; Jesper V Olsen; James Haile; Jessica Thomas; Curtis W Marean; John Parkington; Samantha Presslee; Julia Lee-Thorp; Peter Ditchfield; Jacqueline F Hamilton; Martyn W Ward; Chunting Michelle Wang; Marvin D Shaw; Terry Harrison; Manuel Domínguez-Rodrigo; Ross DE MacPhee; Amandus Kwekason; Michaela Ecker; Liora Kolska Horwitz; Michael Chazan; Roland Kröger; Jane Thomas-Oates; John H Harding; Enrico Cappellini; Kirsty Penkman; Matthew J Collins
Journal:  Elife       Date:  2016-09-27       Impact factor: 8.140

8.  Testing the Hypothesis of Biofilm as a Source for Soft Tissue and Cell-Like Structures Preserved in Dinosaur Bone.

Authors:  Mary Higby Schweitzer; Alison E Moyer; Wenxia Zheng
Journal:  PLoS One       Date:  2016-02-29       Impact factor: 3.240

9.  Microscopical and elemental FESEM and Phenom ProX-SEM-EDS analysis of osteocyte- and blood vessel-like microstructures obtained from fossil vertebrates of the Eocene Messel Pit, Germany.

Authors:  Edwin Cadena
Journal:  PeerJ       Date:  2016-01-21       Impact factor: 2.984

10.  Chemistry supports the identification of gender-specific reproductive tissue in Tyrannosaurus rex.

Authors:  Mary Higby Schweitzer; Wenxia Zheng; Lindsay Zanno; Sarah Werning; Toshie Sugiyama
Journal:  Sci Rep       Date:  2016-03-15       Impact factor: 4.379

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