Literature DB >> 31210129

Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities.

Evan T Saitta1, Renxing Liang2, Maggie Cy Lau2,3, Caleb M Brown4, Nicholas R Longrich5,6, Thomas G Kaye7, Ben J Novak8, Steven L Salzberg9,10,11, Mark A Norell12, Geoffrey D Abbott13, Marc R Dickinson14, Jakob Vinther15,16, Ian D Bull17, Richard A Brooker15, Peter Martin18, Paul Donohoe13, Timothy Dj Knowles17,19, Kirsty Eh Penkman14, Tullis Onstott2.   

Abstract

Fossils were thought to lack original organic molecules, but chemical analyses show that some can survive. Dinosaur bone has been proposed to preserve collagen, osteocytes, and blood vessels. However, proteins and labile lipids are diagenetically unstable, and bone is a porous open system, allowing microbial/molecular flux. These 'soft tissues' have been reinterpreted as biofilms. Organic preservation versus contamination of dinosaur bone was examined by freshly excavating, with aseptic protocols, fossils and sedimentary matrix, and chemically/biologically analyzing them. Fossil 'soft tissues' differed from collagen chemically and structurally; while degradation would be expected, the patterns observed did not support this. 16S rRNA amplicon sequencing revealed that dinosaur bone hosted an abundant microbial community different from lesser abundant communities of surrounding sediment. Subsurface dinosaur bone is a relatively fertile habitat, attracting microbes that likely utilize inorganic nutrients and complicate identification of original organic material. There exists potential post-burial taphonomic roles for subsurface microorganisms.
© 2019, Saitta et al.

Entities:  

Keywords:  biochemistry; chemical biology; fossils; infectious disease; microbiology; microbiome; proteins

Mesh:

Substances:

Year:  2019        PMID: 31210129      PMCID: PMC6581507          DOI: 10.7554/eLife.46205

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  66 in total

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Authors:  Robert S Sansom; Sarah E Gabbott; Mark A Purnell
Journal:  Nature       Date:  2010-01-31       Impact factor: 49.962

2.  Soft-tissue vessels and cellular preservation in Tyrannosaurus rex.

Authors:  Mary H Schweitzer; Jennifer L Wittmeyer; John R Horner; Jan K Toporski
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

Review 3.  Molecular preservation.

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4.  Gender-specific reproductive tissue in ratites and Tyrannosaurus rex.

Authors:  Mary H Schweitzer; Jennifer L Wittmeyer; John R Horner
Journal:  Science       Date:  2005-06-03       Impact factor: 47.728

5.  Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry".

Authors:  Pavel A Pevzner; Sangtae Kim; Julio Ng
Journal:  Science       Date:  2008-08-22       Impact factor: 47.728

Review 6.  A guide to the field of palaeo colour: Melanin and other pigments can fossilise: Reconstructing colour patterns from ancient organisms can give new insights to ecology and behaviour.

Authors:  Jakob Vinther
Journal:  Bioessays       Date:  2015-04-08       Impact factor: 4.345

Review 7.  A guide to ancient protein studies.

Authors:  Jessica Hendy; Frido Welker; Beatrice Demarchi; Camilla Speller; Christina Warinner; Matthew J Collins
Journal:  Nat Ecol Evol       Date:  2018-03-26       Impact factor: 15.460

8.  The complete mitochondrial DNA genome of an unknown hominin from southern Siberia.

Authors:  Johannes Krause; Qiaomei Fu; Jeffrey M Good; Bence Viola; Michael V Shunkov; Anatoli P Derevianko; Svante Pääbo
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

9.  Ancient proteins resolve the evolutionary history of Darwin's South American ungulates.

Authors:  Frido Welker; Matthew J Collins; Jessica A Thomas; Marc Wadsley; Selina Brace; Enrico Cappellini; Samuel T Turvey; Marcelo Reguero; Javier N Gelfo; Alejandro Kramarz; Joachim Burger; Jane Thomas-Oates; David A Ashford; Peter D Ashton; Keri Rowsell; Duncan M Porter; Benedikt Kessler; Roman Fischer; Carsten Baessmann; Stephanie Kaspar; Jesper V Olsen; Patrick Kiley; James A Elliott; Christian D Kelstrup; Victoria Mullin; Michael Hofreiter; Eske Willerslev; Jean-Jacques Hublin; Ludovic Orlando; Ian Barnes; Ross D E MacPhee
Journal:  Nature       Date:  2015-03-18       Impact factor: 49.962

10.  Microspectroscopic evidence of cretaceous bone proteins.

Authors:  Johan Lindgren; Per Uvdal; Anders Engdahl; Andrew H Lee; Carl Alwmark; Karl-Erik Bergquist; Einar Nilsson; Peter Ekström; Magnus Rasmussen; Desirée A Douglas; Michael J Polcyn; Louis L Jacobs
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

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  7 in total

1.  Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America.

Authors:  Renxing Liang; Maggie C Y Lau; Evan T Saitta; Zachary K Garvin; Tullis C Onstott
Journal:  Environ Microbiome       Date:  2020-03-19

2.  Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities.

Authors:  Evan T Saitta; Renxing Liang; Maggie Cy Lau; Caleb M Brown; Nicholas R Longrich; Thomas G Kaye; Ben J Novak; Steven L Salzberg; Mark A Norell; Geoffrey D Abbott; Marc R Dickinson; Jakob Vinther; Ian D Bull; Richard A Brooker; Peter Martin; Paul Donohoe; Timothy Dj Knowles; Kirsty Eh Penkman; Tullis Onstott
Journal:  Elife       Date:  2019-06-18       Impact factor: 8.140

3.  Phylogenetic Signal and Bias in Paleontology.

Authors:  Robert J Asher; Martin R Smith
Journal:  Syst Biol       Date:  2022-06-16       Impact factor: 9.160

Review 4.  Chemistry and Analysis of Organic Compounds in Dinosaurs.

Authors:  Mariam Tahoun; Marianne Engeser; Vigneshwaran Namasivayam; Paul Martin Sander; Christa E Müller
Journal:  Biology (Basel)       Date:  2022-04-27

5.  Transition from unclassified Ktedonobacterales to Actinobacteria during amorphous silica precipitation in a quartzite cave environment.

Authors:  D Ghezzi; F Sauro; A Columbu; C Carbone; P-Y Hong; F Vergara; J De Waele; M Cappelletti
Journal:  Sci Rep       Date:  2021-02-16       Impact factor: 4.379

6.  The bone-degrading enzyme machinery: From multi-component understanding to the treatment of residues from the meat industry.

Authors:  Laura Fernandez-Lopez; Sergio Sanchez-Carrillo; Antonio García-Moyano; Erik Borchert; David Almendral; Sandra Alonso; Isabel Cea-Rama; Noa Miguez; Øivind Larsen; Johannes Werner; Kira S Makarova; Francisco J Plou; Thomas G Dahlgren; Julia Sanz-Aparicio; Ute Hentschel; Gro Elin Kjæreng Bjerga; Manuel Ferrer
Journal:  Comput Struct Biotechnol J       Date:  2021-11-23       Impact factor: 7.271

7.  Reanalysis of putative ovarian follicles suggests that Early Cretaceous birds were feeding not breeding.

Authors:  Gerald Mayr; Thomas G Kaye; Michael Pittman; Evan T Saitta; Christian Pott
Journal:  Sci Rep       Date:  2020-11-04       Impact factor: 4.379

  7 in total

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