Literature DB >> 26594487

Crystal structure of 7-isopropyl-1,4a,N-trimethyl-1,2,3,4,4a,4b,5,6,7,8,10,10a-dodeca-hydro-phenanthrene-1-carb-ox-amide.

Li Liu1, Xin-Yan Yan1, Xiao-Ping Rao1.   

Abstract

In the title compound, C26H37NO, a new derivative of di-hydro-abietic acid, the two cyclo-hexene rings adopt half chair conformations, whereas the cyclo-hexane ring has a chair conformation. Each of the methyl groups is in an axial position with respect to the tricyclic hydro-phenanthrene residue. In the crystal packing, methyl-ene-C-H⋯π(phen-yl) inter-actions lead to supra-molecular helical chains along [010]; the amide-H atom does not form a significant inter-molecular inter-action owing to steric pressure.

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; di­hydro­abietic acid derivative

Year:  2015        PMID: 26594487      PMCID: PMC4647402          DOI: 10.1107/S2056989015017648

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For crystal structure of di­hydro­abietic acid derivatives, see: Rao et al. (2009 ▸); Rao (2010 ▸). For the biological activity of rosin acid derivatives, see: Fonseca et al. (2004 ▸); Gonzaléz et al. (2010 ▸); Rao et al. (2008 ▸); Sepulveda et al. (2005 ▸); Xing et al. (2013 ▸).

Experimental

Crystal data

C26H37NO M = 379.57 Orthorhombic, a = 26.223 (5) Å b = 5.9230 (12) Å c = 14.493 (3) Å V = 2251.0 (8) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.20 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CAD-4 Software; Enraf–Nonius, 1985 ▸) T min = 0.987, T max = 0.993 4707 measured reflections 4122 independent reflections 2080 reflections with I > 2σ(I) R int = 0.099 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.079 wR(F 2) = 0.193 S = 1.01 4122 reflections 254 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.30 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▸); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015017648/tk5389sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017648/tk5389Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015017648/tk5389fig1.tif Mol­ecular structure of the title compound, with H atoms represented by small spheres of arbitrary radius and displacement ellipsoids at the 30% probability level. CCDC reference: 1426243 Additional supporting information: crystallographic information; 3D view; checkCIF report
C26H37NODx = 1.120 Mg m3
Mr = 379.57Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 25 reflections
a = 26.223 (5) Åθ = 9–13°
b = 5.9230 (12) ŵ = 0.07 mm1
c = 14.493 (3) ÅT = 293 K
V = 2251.0 (8) Å3Block, white
Z = 40.20 × 0.20 × 0.10 mm
F(000) = 832
Enraf–Nonius CAD-4 diffractometer2080 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.099
Graphite monochromatorθmax = 25.4°, θmin = 1.6°
ω/2θ scansh = −31→31
Absorption correction: ψ scan (CAD-4 Software; Enraf–Nonius, 1985)k = 0→7
Tmin = 0.987, Tmax = 0.993l = 0→17
4707 measured reflections3 standard reflections every 200 reflections
4122 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.079H-atom parameters constrained
wR(F2) = 0.193w = 1/[σ2(Fo2) + (0.040P)2 + 2.3P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
4122 reflectionsΔρmax = 0.21 e Å3
254 parametersΔρmin = −0.30 e Å3
0 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.04603 (15)0.2213 (8)0.1116 (3)0.0541 (12)
H0A0.03400.35610.10810.065*
O0.02279 (14)−0.1458 (7)0.1135 (3)0.0712 (12)
C1−0.04586 (18)0.1222 (9)0.0953 (3)0.0443 (13)
C2−0.07609 (18)0.0042 (11)0.1719 (3)0.0547 (15)
H2A−0.0656−0.15260.17560.066*
H2B−0.06850.07520.23060.066*
C3−0.13357 (19)0.0159 (10)0.1540 (3)0.0534 (15)
H3A−0.1514−0.06520.20250.064*
H3B−0.14450.17230.15620.064*
C4−0.14786 (18)−0.0847 (9)0.0608 (3)0.0444 (13)
H4A−0.1844−0.07190.05200.053*
H4B−0.1392−0.24390.06030.053*
C5−0.12012 (18)0.0350 (9)−0.0201 (3)0.0373 (12)
C6−0.12908 (18)−0.1043 (9)−0.1095 (3)0.0444 (13)
C7−0.18354 (18)−0.1681 (10)−0.1295 (3)0.0515 (15)
H7A−0.2058−0.0466−0.10960.062*
H7B−0.1922−0.3016−0.09410.062*
C8−0.1931 (2)−0.2149 (12)−0.2312 (4)0.0659 (18)
H8A−0.2269−0.2785−0.23880.079*
H8B−0.1917−0.0742−0.26530.079*
C9−0.1547 (2)−0.3739 (12)−0.2690 (3)0.0620 (17)
H9A−0.1558−0.5079−0.22940.074*
C10−0.1015 (2)−0.2759 (12)−0.2579 (4)0.0637 (17)
H10A−0.0770−0.3989−0.25880.076*
H10B−0.0943−0.1800−0.31060.076*
C11−0.0933 (2)−0.1404 (10)−0.1712 (4)0.0521 (15)
C12−0.03866 (19)−0.0583 (12)−0.1611 (3)0.0645 (18)
H12A−0.0165−0.1873−0.15120.077*
H12B−0.02820.0143−0.21800.077*
C13−0.03203 (18)0.1058 (11)−0.0822 (3)0.0561 (16)
H13A−0.04430.2538−0.10030.067*
H13B0.00380.1190−0.06680.067*
C14−0.06178 (17)0.0224 (9)0.0016 (3)0.0416 (13)
H14A−0.0541−0.13910.00600.050*
C15−0.0514 (2)0.3815 (10)0.1043 (4)0.0629 (16)
H15A−0.08680.41970.11100.094*
H15B−0.03800.45290.05000.094*
H15C−0.03290.43280.15750.094*
C16−0.1422 (2)0.2680 (10)−0.0338 (4)0.0597 (16)
H16A−0.13670.35670.02070.089*
H16B−0.17820.2562−0.04540.089*
H16C−0.12590.3393−0.08540.089*
C17−0.1645 (3)−0.4587 (13)−0.3682 (4)0.081 (2)
H17A−0.1606−0.3274−0.40870.097*
C18−0.1258 (3)−0.6326 (14)−0.4005 (4)0.109 (3)
H18A−0.1333−0.6755−0.46290.164*
H18B−0.1275−0.7632−0.36140.164*
H18C−0.0922−0.5688−0.39770.164*
C19−0.2188 (3)−0.5441 (16)−0.3825 (4)0.114 (3)
H19A−0.2230−0.5928−0.44520.170*
H19B−0.2425−0.4247−0.36960.170*
H19C−0.2252−0.6687−0.34170.170*
C200.0111 (2)0.0508 (10)0.1082 (4)0.0501 (14)
C210.09969 (19)0.2039 (9)0.1201 (4)0.0455 (13)
C220.1229 (2)0.0189 (13)0.1586 (4)0.0669 (18)
H22A0.1035−0.10270.17880.080*
C230.1762 (2)0.0137 (13)0.1673 (4)0.074 (2)
H23A0.1921−0.11030.19400.089*
C240.2042 (2)0.1900 (14)0.1367 (4)0.082 (2)
H24A0.23950.18470.14150.098*
C250.1812 (2)0.3788 (12)0.0981 (4)0.0692 (18)
H25A0.20050.50100.07810.083*
C260.1281 (2)0.3796 (11)0.0904 (4)0.0614 (16)
H26A0.11190.50380.06420.074*
U11U22U33U12U13U23
N0.045 (3)0.058 (3)0.060 (3)−0.004 (2)−0.007 (2)0.003 (3)
O0.046 (2)0.066 (3)0.101 (3)0.001 (2)−0.021 (2)−0.003 (3)
C10.035 (3)0.054 (3)0.044 (3)−0.005 (3)−0.005 (2)−0.003 (3)
C20.053 (4)0.071 (4)0.040 (3)−0.005 (3)−0.006 (3)0.002 (3)
C30.053 (3)0.068 (4)0.040 (3)−0.008 (3)0.006 (2)−0.008 (3)
C40.035 (3)0.054 (3)0.044 (3)−0.007 (3)0.004 (2)0.001 (3)
C50.039 (3)0.041 (3)0.032 (3)−0.005 (2)−0.001 (2)0.002 (2)
C60.036 (3)0.060 (3)0.037 (3)0.003 (3)0.000 (2)0.006 (3)
C70.037 (3)0.071 (4)0.047 (3)0.000 (3)−0.004 (2)−0.007 (3)
C80.045 (4)0.103 (5)0.049 (4)−0.007 (4)−0.009 (3)−0.010 (4)
C90.070 (4)0.093 (5)0.024 (3)−0.015 (4)−0.004 (3)−0.004 (3)
C100.052 (4)0.098 (5)0.041 (3)−0.009 (4)−0.004 (3)−0.012 (3)
C110.042 (3)0.069 (4)0.046 (3)−0.005 (3)−0.002 (3)0.000 (3)
C120.041 (3)0.111 (5)0.041 (3)−0.017 (4)0.005 (3)−0.012 (4)
C130.038 (3)0.083 (4)0.047 (3)−0.011 (3)0.002 (2)−0.005 (3)
C140.034 (3)0.049 (3)0.042 (3)−0.006 (2)0.001 (2)−0.003 (3)
C150.055 (4)0.062 (4)0.072 (4)−0.005 (3)−0.017 (3)−0.003 (3)
C160.053 (4)0.062 (4)0.064 (4)0.001 (3)−0.016 (3)0.010 (3)
C170.097 (5)0.108 (6)0.038 (3)−0.031 (5)−0.006 (3)−0.007 (4)
C180.131 (7)0.141 (8)0.055 (4)−0.017 (6)0.018 (5)−0.035 (5)
C190.102 (6)0.178 (9)0.061 (4)−0.048 (6)−0.022 (4)−0.022 (6)
C200.049 (3)0.049 (3)0.052 (3)−0.004 (3)−0.009 (3)0.009 (3)
C210.039 (3)0.050 (3)0.047 (3)−0.004 (3)−0.002 (3)0.003 (3)
C220.039 (4)0.100 (5)0.062 (4)−0.009 (4)−0.002 (3)0.018 (4)
C230.041 (4)0.093 (5)0.087 (5)−0.005 (4)−0.009 (3)0.015 (4)
C240.041 (4)0.135 (7)0.069 (5)0.002 (4)0.002 (3)−0.005 (5)
C250.050 (4)0.095 (5)0.063 (4)−0.030 (4)0.005 (3)0.008 (4)
C260.055 (4)0.082 (5)0.047 (3)−0.007 (3)−0.005 (3)0.009 (3)
N—C201.364 (6)C11—C121.519 (7)
N—C211.416 (6)C12—C131.511 (7)
N—H0A0.8600C12—H12A0.9700
O—C201.206 (6)C12—H12B0.9700
C1—C21.532 (7)C13—C141.526 (6)
C1—C141.539 (6)C13—H13A0.9700
C1—C151.548 (7)C13—H13B0.9700
C1—C201.564 (7)C14—H14A0.9800
C2—C31.531 (6)C15—H15A0.9600
C2—H2A0.9700C15—H15B0.9600
C2—H2B0.9700C15—H15C0.9600
C3—C41.524 (6)C16—H16A0.9600
C3—H3A0.9700C16—H16B0.9600
C3—H3B0.9700C16—H16C0.9600
C4—C51.551 (6)C17—C181.520 (9)
C4—H4A0.9700C17—C191.525 (8)
C4—H4B0.9700C17—H17A0.9800
C5—C161.510 (7)C18—H18A0.9600
C5—C61.555 (6)C18—H18B0.9600
C5—C141.564 (6)C18—H18C0.9600
C6—C111.315 (6)C19—H19A0.9600
C6—C71.505 (6)C19—H19B0.9600
C7—C81.520 (7)C19—H19C0.9600
C7—H7A0.9700C21—C261.350 (7)
C7—H7B0.9700C21—C221.372 (7)
C8—C91.484 (8)C22—C231.402 (7)
C8—H8A0.9700C22—H22A0.9300
C8—H8B0.9700C23—C241.351 (9)
C9—C101.519 (7)C23—H23A0.9300
C9—C171.544 (7)C24—C251.388 (9)
C9—H9A0.9800C24—H24A0.9300
C10—C111.506 (7)C25—C261.397 (7)
C10—H10A0.9700C25—H25A0.9300
C10—H10B0.9700C26—H26A0.9300
C20—N—C21128.0 (5)C13—C12—H12B109.0
C20—N—H0A116.0C11—C12—H12B109.0
C21—N—H0A116.0H12A—C12—H12B107.8
C2—C1—C14108.9 (4)C12—C13—C14109.6 (4)
C2—C1—C15110.1 (5)C12—C13—H13A109.8
C14—C1—C15115.4 (5)C14—C13—H13A109.8
C2—C1—C20106.6 (4)C12—C13—H13B109.8
C14—C1—C20105.1 (4)C14—C13—H13B109.8
C15—C1—C20110.4 (4)H13A—C13—H13B108.2
C3—C2—C1111.5 (4)C13—C14—C1116.1 (4)
C3—C2—H2A109.3C13—C14—C5109.0 (4)
C1—C2—H2A109.3C1—C14—C5115.1 (4)
C3—C2—H2B109.3C13—C14—H14A105.2
C1—C2—H2B109.3C1—C14—H14A105.2
H2A—C2—H2B108.0C5—C14—H14A105.2
C4—C3—C2112.0 (4)C1—C15—H15A109.5
C4—C3—H3A109.2C1—C15—H15B109.5
C2—C3—H3A109.2H15A—C15—H15B109.5
C4—C3—H3B109.2C1—C15—H15C109.5
C2—C3—H3B109.2H15A—C15—H15C109.5
H3A—C3—H3B107.9H15B—C15—H15C109.5
C3—C4—C5112.1 (4)C5—C16—H16A109.5
C3—C4—H4A109.2C5—C16—H16B109.5
C5—C4—H4A109.2H16A—C16—H16B109.5
C3—C4—H4B109.2C5—C16—H16C109.5
C5—C4—H4B109.2H16A—C16—H16C109.5
H4A—C4—H4B107.9H16B—C16—H16C109.5
C16—C5—C4109.7 (4)C18—C17—C19110.9 (6)
C16—C5—C6108.5 (4)C18—C17—C9113.3 (6)
C4—C5—C6108.5 (4)C19—C17—C9113.0 (5)
C16—C5—C14116.5 (4)C18—C17—H17A106.3
C4—C5—C14106.6 (4)C19—C17—H17A106.3
C6—C5—C14106.9 (4)C9—C17—H17A106.3
C11—C6—C7120.4 (5)C17—C18—H18A109.5
C11—C6—C5123.1 (5)C17—C18—H18B109.5
C7—C6—C5115.9 (4)H18A—C18—H18B109.5
C6—C7—C8112.9 (4)C17—C18—H18C109.5
C6—C7—H7A109.0H18A—C18—H18C109.5
C8—C7—H7A109.0H18B—C18—H18C109.5
C6—C7—H7B109.0C17—C19—H19A109.5
C8—C7—H7B109.0C17—C19—H19B109.5
H7A—C7—H7B107.8H19A—C19—H19B109.5
C9—C8—C7111.3 (5)C17—C19—H19C109.5
C9—C8—H8A109.4H19A—C19—H19C109.5
C7—C8—H8A109.4H19B—C19—H19C109.5
C9—C8—H8B109.4O—C20—N122.8 (5)
C7—C8—H8B109.4O—C20—C1120.7 (5)
H8A—C8—H8B108.0N—C20—C1116.4 (5)
C8—C9—C10109.9 (5)C26—C21—C22120.0 (5)
C8—C9—C17115.9 (5)C26—C21—N117.6 (5)
C10—C9—C17112.2 (5)C22—C21—N122.4 (5)
C8—C9—H9A106.0C21—C22—C23119.8 (6)
C10—C9—H9A106.0C21—C22—H22A120.1
C17—C9—H9A106.0C23—C22—H22A120.1
C11—C10—C9115.0 (4)C24—C23—C22119.7 (7)
C11—C10—H10A108.5C24—C23—H23A120.2
C9—C10—H10A108.5C22—C23—H23A120.2
C11—C10—H10B108.5C23—C24—C25121.2 (6)
C9—C10—H10B108.5C23—C24—H24A119.4
H10A—C10—H10B107.5C25—C24—H24A119.4
C6—C11—C10123.5 (5)C24—C25—C26118.0 (6)
C6—C11—C12123.8 (5)C24—C25—H25A121.0
C10—C11—C12112.7 (4)C26—C25—H25A121.0
C13—C12—C11112.8 (4)C21—C26—C25121.4 (6)
C13—C12—H12A109.0C21—C26—H26A119.3
C11—C12—H12A109.0C25—C26—H26A119.3
C14—C1—C2—C3−54.0 (6)C15—C1—C14—C1360.9 (6)
C15—C1—C2—C373.4 (6)C20—C1—C14—C13−61.0 (6)
C20—C1—C2—C3−166.9 (5)C2—C1—C14—C556.2 (6)
C1—C2—C3—C456.7 (6)C15—C1—C14—C5−68.1 (6)
C2—C3—C4—C5−58.1 (6)C20—C1—C14—C5170.0 (4)
C3—C4—C5—C16−71.7 (5)C16—C5—C14—C13−65.6 (6)
C3—C4—C5—C6169.9 (4)C4—C5—C14—C13171.6 (4)
C3—C4—C5—C1455.2 (5)C6—C5—C14—C1355.8 (5)
C16—C5—C6—C11101.6 (6)C16—C5—C14—C166.8 (6)
C4—C5—C6—C11−139.2 (5)C4—C5—C14—C1−56.0 (5)
C14—C5—C6—C11−24.7 (7)C6—C5—C14—C1−171.8 (4)
C16—C5—C6—C7−69.5 (6)C8—C9—C17—C18−176.2 (6)
C4—C5—C6—C749.6 (6)C10—C9—C17—C1856.4 (8)
C14—C5—C6—C7164.2 (4)C8—C9—C17—C19−49.0 (9)
C11—C6—C7—C8−14.9 (8)C10—C9—C17—C19−176.3 (7)
C5—C6—C7—C8156.5 (5)C21—N—C20—O0.9 (9)
C6—C7—C8—C949.8 (7)C21—N—C20—C1−178.2 (5)
C7—C8—C9—C10−59.3 (6)C2—C1—C20—O52.5 (7)
C7—C8—C9—C17172.2 (5)C14—C1—C20—O−62.9 (7)
C8—C9—C10—C1135.4 (7)C15—C1—C20—O172.0 (6)
C17—C9—C10—C11165.9 (6)C2—C1—C20—N−128.3 (5)
C7—C6—C11—C10−9.5 (9)C14—C1—C20—N116.2 (5)
C5—C6—C11—C10179.7 (5)C15—C1—C20—N−8.8 (7)
C7—C6—C11—C12173.0 (5)C20—N—C21—C26157.2 (6)
C5—C6—C11—C122.3 (9)C20—N—C21—C22−24.0 (9)
C9—C10—C11—C6−1.1 (9)C26—C21—C22—C230.4 (9)
C9—C10—C11—C12176.7 (6)N—C21—C22—C23−178.4 (5)
C6—C11—C12—C13−10.9 (8)C21—C22—C23—C24−0.8 (10)
C10—C11—C12—C13171.4 (5)C22—C23—C24—C251.2 (11)
C11—C12—C13—C1442.7 (7)C23—C24—C25—C26−1.1 (10)
C12—C13—C14—C1160.7 (4)C22—C21—C26—C25−0.3 (9)
C12—C13—C14—C5−67.4 (6)N—C21—C26—C25178.5 (5)
C2—C1—C14—C13−174.8 (5)C24—C25—C26—C210.7 (9)
D—H···AD—HH···AD···AD—H···A
C3—H3A···Cg1i0.972.823.705 (5)151
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C21C26 ring.

DHA DHHA D A DHA
C3H3A Cg1i 0.972.823.705(5)151

Symmetry code: (i) .

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