Literature DB >> 21588936

N-Morpholino-Δ-dihydro-abietamide.

Xiao-Ping Rao1.   

Abstract

The title compound, C(24)H(39)NO(2) (systematic name: 4-{[1,4a-dimethyl-7-(propan-2-yl)-1,2,3,4,4a,5,6,7,8,9,10,10a-dodeca-hydro-phenanthren-1-yl]carbon-yl}morpholine), has been synthesized from Δ(8)-dihydro-abietic acid. Two cyclo-hexene rings adopt half-chair conformations, whereas the cyclo-hexane and morpholine rings are each in the chair conformation. Two methyl groups are in an axial position with respect to the tricyclic hydro-phenanthrene nuclei.

Entities:  

Year:  2010        PMID: 21588936      PMCID: PMC3008990          DOI: 10.1107/S1600536810039073

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on Δ8-dihydro­abietic acid, see: Rao et al. (2009 ▶). For the biological activity of rosin acid derivatives, see Fonseca et al. (2004 ▶); Sepulveda et al. (2005 ▶).

Experimental

Crystal data

C24H39NO2 M = 373.56 Orthorhombic, a = 7.8683 (16) Å b = 11.036 (2) Å c = 24.726 (5) Å V = 2147.1 (7) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.42 × 0.34 × 0.25 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.352, T max = 0.497 16937 measured reflections 2186 independent reflections 1957 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.117 S = 1.37 2186 reflections 248 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.26 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039073/kp2277sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039073/kp2277Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H39NO2F(000) = 824
Mr = 373.56Dx = 1.156 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 16603 reflections
a = 7.8683 (16) Åθ = 3.1–27.4°
b = 11.036 (2) ŵ = 0.07 mm1
c = 24.726 (5) ÅT = 293 K
V = 2147.1 (7) Å3Block, colorless
Z = 40.42 × 0.34 × 0.25 mm
Rigaku R-AXIS RAPID diffractometer2186 independent reflections
Radiation source: fine-focus sealed tube1957 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 0 pixels mm-1θmax = 25.0°, θmin = 3.1°
ω scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −13→13
Tmin = 0.352, Tmax = 0.497l = −29→29
16937 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.117w = 1/[σ2(Fo2) + (0.0672P)2] where P = (Fo2 + 2Fc2)/3
S = 1.37(Δ/σ)max < 0.001
2186 reflectionsΔρmax = 0.23 e Å3
248 parametersΔρmin = −0.26 e Å3
0 restraintsAbsolute structure: Flack (1983), ??? Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.1743 (3)0.85945 (18)0.01582 (7)0.0661 (6)
O20.9634 (2)0.83691 (14)0.19288 (7)0.0528 (5)
N11.0754 (3)0.75942 (19)0.11701 (8)0.0523 (6)
C11.1939 (4)0.8606 (3)0.11335 (10)0.0577 (7)
H1A1.30950.83010.11320.069*
H1B1.18050.91260.14470.069*
C21.1629 (4)0.9328 (3)0.06276 (10)0.0627 (8)
H2A1.05080.96930.06450.075*
H2B1.24580.99770.06050.075*
C31.0545 (4)0.7641 (3)0.01898 (10)0.0586 (7)
H3A1.06280.7147−0.01340.070*
H3B0.94090.79810.02030.070*
C41.0817 (4)0.6852 (2)0.06789 (9)0.0501 (6)
H4A0.99440.62330.06940.060*
H4B1.19130.64530.06540.060*
C50.9656 (3)0.75310 (19)0.16034 (9)0.0404 (5)
C60.9513 (3)0.52216 (19)0.16245 (10)0.0467 (6)
H6A1.05930.53900.14600.070*
H6B0.88980.46550.14040.070*
H6C0.96880.48820.19780.070*
C70.6449 (4)0.4303 (2)0.23662 (10)0.0492 (6)
H7A0.74480.41750.25820.074*
H7B0.66430.40040.20070.074*
H7C0.55080.38790.25250.074*
C80.8477 (3)0.64162 (18)0.16745 (8)0.0371 (5)
C90.7048 (3)0.6567 (2)0.12412 (9)0.0467 (6)
H9A0.66550.74000.12460.056*
H9B0.75260.64100.08860.056*
C100.5535 (3)0.5732 (2)0.13276 (10)0.0509 (6)
H10A0.46850.58950.10530.061*
H10B0.58990.48980.12870.061*
C110.4745 (3)0.5901 (2)0.18848 (9)0.0478 (6)
H11A0.38010.53430.19260.057*
H11B0.43020.67180.19150.057*
C120.6045 (3)0.56781 (19)0.23426 (9)0.0373 (5)
C130.7604 (3)0.65211 (18)0.22398 (8)0.0344 (5)
H13A0.71400.73450.22500.041*
C140.8810 (3)0.6454 (2)0.27262 (9)0.0391 (5)
H14A0.91050.56160.27990.047*
H14B0.98470.68950.26480.047*
C150.7940 (3)0.7000 (2)0.32151 (9)0.0448 (6)
H15A0.79830.78760.31870.054*
H15B0.85620.67680.35380.054*
C160.6101 (3)0.66108 (19)0.32775 (9)0.0376 (5)
C170.5253 (3)0.60145 (18)0.28917 (9)0.0381 (5)
C180.5310 (3)0.6973 (2)0.38098 (9)0.0456 (6)
H18A0.55290.78280.38690.055*
H18B0.58750.65300.40970.055*
C190.3437 (3)0.5623 (3)0.29822 (11)0.0539 (6)
H19A0.32750.48240.28260.065*
H19B0.26850.61790.27960.065*
C200.2957 (4)0.5583 (3)0.35748 (11)0.0563 (7)
H20A0.17460.54350.36080.068*
H20B0.35510.49190.37490.068*
C210.3398 (3)0.6757 (2)0.38580 (10)0.0458 (6)
H21A0.28470.74040.36510.055*
C220.2693 (4)0.6842 (2)0.44366 (10)0.0553 (7)
H22A0.14540.67850.44060.066*
C230.3069 (5)0.8059 (3)0.46971 (13)0.0773 (10)
H23A0.25790.80820.50520.116*
H23B0.25900.86950.44800.116*
H23C0.42770.81700.47230.116*
C240.3247 (5)0.5812 (3)0.48076 (12)0.0782 (9)
H24A0.44570.58420.48570.117*
H24B0.29380.50500.46480.117*
H24C0.26950.58940.51520.117*
U11U22U33U12U13U23
O10.0850 (15)0.0717 (11)0.0416 (9)−0.0148 (11)0.0137 (10)0.0019 (9)
O20.0659 (12)0.0420 (8)0.0504 (9)−0.0102 (8)0.0087 (9)−0.0097 (8)
N10.0661 (14)0.0536 (11)0.0370 (10)−0.0205 (11)0.0084 (10)−0.0062 (9)
C10.0629 (17)0.0646 (15)0.0457 (13)−0.0236 (14)0.0031 (13)−0.0030 (13)
C20.078 (2)0.0529 (13)0.0566 (16)−0.0142 (14)0.0135 (16)−0.0022 (13)
C30.0667 (17)0.0687 (16)0.0403 (13)−0.0044 (14)0.0025 (13)−0.0082 (12)
C40.0550 (15)0.0503 (13)0.0448 (13)−0.0032 (11)0.0071 (12)−0.0088 (11)
C50.0461 (13)0.0393 (10)0.0357 (11)−0.0004 (10)−0.0029 (10)0.0020 (10)
C60.0499 (14)0.0411 (11)0.0490 (13)0.0025 (10)0.0043 (12)−0.0013 (11)
C70.0593 (16)0.0358 (11)0.0525 (14)−0.0042 (11)0.0030 (13)−0.0037 (10)
C80.0419 (12)0.0346 (10)0.0348 (11)−0.0007 (9)−0.0026 (9)0.0002 (9)
C90.0538 (14)0.0511 (13)0.0352 (11)−0.0002 (12)−0.0066 (11)−0.0010 (11)
C100.0480 (15)0.0608 (14)0.0440 (12)−0.0039 (12)−0.0159 (11)−0.0033 (12)
C110.0412 (13)0.0555 (13)0.0466 (13)−0.0047 (11)−0.0083 (11)−0.0049 (11)
C120.0360 (12)0.0359 (10)0.0400 (11)−0.0019 (9)−0.0018 (10)−0.0025 (9)
C130.0349 (11)0.0329 (9)0.0355 (11)0.0024 (9)−0.0037 (8)0.0009 (9)
C140.0330 (11)0.0451 (11)0.0392 (12)0.0017 (10)−0.0043 (9)0.0036 (10)
C150.0401 (13)0.0548 (13)0.0396 (12)−0.0050 (10)−0.0048 (10)−0.0014 (11)
C160.0381 (12)0.0364 (10)0.0385 (11)0.0008 (9)−0.0006 (9)0.0001 (9)
C170.0358 (12)0.0379 (10)0.0406 (11)−0.0020 (9)−0.0004 (10)0.0000 (10)
C180.0514 (14)0.0454 (11)0.0401 (12)0.0020 (10)0.0006 (11)−0.0022 (11)
C190.0433 (14)0.0643 (14)0.0541 (15)−0.0108 (12)0.0053 (12)−0.0092 (13)
C200.0472 (15)0.0633 (15)0.0585 (15)−0.0120 (13)0.0121 (13)−0.0016 (13)
C210.0469 (13)0.0437 (12)0.0469 (13)0.0016 (10)0.0056 (11)0.0054 (11)
C220.0543 (16)0.0597 (15)0.0520 (14)0.0023 (12)0.0118 (13)0.0056 (12)
C230.100 (3)0.0742 (19)0.0581 (17)0.0018 (18)0.0266 (19)−0.0087 (15)
C240.095 (3)0.085 (2)0.0553 (17)0.0004 (19)0.0128 (17)0.0227 (16)
O1—C31.415 (3)C11—H11B0.9700
O1—C21.418 (3)C12—C171.539 (3)
O2—C51.226 (3)C12—C131.561 (3)
N1—C51.378 (3)C13—C141.534 (3)
N1—C11.458 (3)C13—H13A0.9800
N1—C41.466 (3)C14—C151.514 (3)
C1—C21.503 (4)C14—H14A0.9700
C1—H1A0.9700C14—H14B0.9700
C1—H1B0.9700C15—C161.517 (3)
C2—H2A0.9700C15—H15A0.9700
C2—H2B0.9700C15—H15B0.9700
C3—C41.505 (3)C16—C171.337 (3)
C3—H3A0.9700C16—C181.510 (3)
C3—H3B0.9700C17—C191.509 (3)
C4—H4A0.9700C18—C211.528 (4)
C4—H4B0.9700C18—H18A0.9700
C5—C81.551 (3)C18—H18B0.9700
C6—C81.555 (3)C19—C201.514 (4)
C6—H6A0.9600C19—H19A0.9700
C6—H6B0.9600C19—H19B0.9700
C6—H6C0.9600C20—C211.513 (4)
C7—C121.552 (3)C20—H20A0.9700
C7—H7A0.9600C20—H20B0.9700
C7—H7B0.9600C21—C221.537 (3)
C7—H7C0.9600C21—H21A0.9800
C8—C91.562 (3)C22—C231.519 (4)
C8—C131.562 (3)C22—C241.524 (4)
C9—C101.520 (3)C22—H22A0.9800
C9—H9A0.9700C23—H23A0.9600
C9—H9B0.9700C23—H23B0.9600
C10—C111.523 (3)C23—H23C0.9600
C10—H10A0.9700C24—H24A0.9600
C10—H10B0.9700C24—H24B0.9600
C11—C121.545 (3)C24—H24C0.9600
C11—H11A0.9700
C3—O1—C2109.73 (19)C17—C12—C13108.54 (17)
C5—N1—C1119.21 (19)C11—C12—C13107.85 (17)
C5—N1—C4129.6 (2)C7—C12—C13115.32 (19)
C1—N1—C4110.79 (19)C14—C13—C12109.26 (17)
N1—C1—C2110.7 (2)C14—C13—C8115.23 (17)
N1—C1—H1A109.5C12—C13—C8116.57 (17)
C2—C1—H1A109.5C14—C13—H13A104.8
N1—C1—H1B109.5C12—C13—H13A104.8
C2—C1—H1B109.5C8—C13—H13A104.8
H1A—C1—H1B108.1C15—C14—C13109.08 (18)
O1—C2—C1111.6 (2)C15—C14—H14A109.9
O1—C2—H2A109.3C13—C14—H14A109.9
C1—C2—H2A109.3C15—C14—H14B109.9
O1—C2—H2B109.3C13—C14—H14B109.9
C1—C2—H2B109.3H14A—C14—H14B108.3
H2A—C2—H2B108.0C14—C15—C16113.57 (19)
O1—C3—C4112.3 (2)C14—C15—H15A108.9
O1—C3—H3A109.1C16—C15—H15A108.9
C4—C3—H3A109.1C14—C15—H15B108.9
O1—C3—H3B109.1C16—C15—H15B108.9
C4—C3—H3B109.1H15A—C15—H15B107.7
H3A—C3—H3B107.9C17—C16—C18123.2 (2)
N1—C4—C3109.75 (19)C17—C16—C15122.8 (2)
N1—C4—H4A109.7C18—C16—C15114.00 (19)
C3—C4—H4A109.7C16—C17—C19120.5 (2)
N1—C4—H4B109.7C16—C17—C12123.1 (2)
C3—C4—H4B109.7C19—C17—C12116.39 (19)
H4A—C4—H4B108.2C16—C18—C21115.6 (2)
O2—C5—N1118.7 (2)C16—C18—H18A108.4
O2—C5—C8121.0 (2)C21—C18—H18A108.4
N1—C5—C8120.22 (19)C16—C18—H18B108.4
C8—C6—H6A109.5C21—C18—H18B108.4
C8—C6—H6B109.5H18A—C18—H18B107.4
H6A—C6—H6B109.5C17—C19—C20112.8 (2)
C8—C6—H6C109.5C17—C19—H19A109.0
H6A—C6—H6C109.5C20—C19—H19A109.0
H6B—C6—H6C109.5C17—C19—H19B109.0
C12—C7—H7A109.5C20—C19—H19B109.0
C12—C7—H7B109.5H19A—C19—H19B107.8
H7A—C7—H7B109.5C21—C20—C19111.5 (2)
C12—C7—H7C109.5C21—C20—H20A109.3
H7A—C7—H7C109.5C19—C20—H20A109.3
H7B—C7—H7C109.5C21—C20—H20B109.3
C5—C8—C6110.49 (18)C19—C20—H20B109.3
C5—C8—C9105.57 (17)H20A—C20—H20B108.0
C6—C8—C9114.40 (18)C20—C21—C18108.9 (2)
C5—C8—C13107.80 (17)C20—C21—C22113.6 (2)
C6—C8—C13111.38 (17)C18—C21—C22114.7 (2)
C9—C8—C13106.83 (18)C20—C21—H21A106.3
C10—C9—C8113.76 (19)C18—C21—H21A106.3
C10—C9—H9A108.8C22—C21—H21A106.3
C8—C9—H9A108.8C23—C22—C24110.4 (2)
C10—C9—H9B108.8C23—C22—C21112.2 (2)
C8—C9—H9B108.8C24—C22—C21114.3 (2)
H9A—C9—H9B107.7C23—C22—H22A106.4
C11—C10—C9111.89 (19)C24—C22—H22A106.4
C11—C10—H10A109.2C21—C22—H22A106.4
C9—C10—H10A109.2C22—C23—H23A109.5
C11—C10—H10B109.2C22—C23—H23B109.5
C9—C10—H10B109.2H23A—C23—H23B109.5
H10A—C10—H10B107.9C22—C23—H23C109.5
C10—C11—C12111.9 (2)H23A—C23—H23C109.5
C10—C11—H11A109.2H23B—C23—H23C109.5
C12—C11—H11A109.2C22—C24—H24A109.5
C10—C11—H11B109.2C22—C24—H24B109.5
C12—C11—H11B109.2H24A—C24—H24B109.5
H11A—C11—H11B107.9C22—C24—H24C109.5
C17—C12—C11109.88 (19)H24A—C24—H24C109.5
C17—C12—C7106.60 (18)H24B—C24—H24C109.5
C11—C12—C7108.60 (19)
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