Literature DB >> 26594439

Crystal structure of 2-hy-droxy-2-(2-oxo-cyclo-hept-yl)-2,3-di-hydro-1H-indene-1,3-dione.

P Kaleel Ahamed1, N Srinivasan2, R Ranjith Kumar3, R V Krishnakumar2.   

Abstract

In the title compound, C16H16O4, the five-membered ring of the indene-1,3-dione unit adopts a twist conformation, whereas the seven-membered ring adopts a twist-chair conformation. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, weak C-H⋯O hydrogen bonds and π-π stacking [centroid-to-centroid distance = 3.7373 (8) Å] into a three-dimensional supra-molecular architecture.

Entities:  

Keywords:  crystal structure; hydrogen bonding; indene-1,3-dione; π–π stacking

Year:  2015        PMID: 26594439      PMCID: PMC4647374          DOI: 10.1107/S2056989015016126

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the background and potential applications of the title compound, see: Andreu et al. (2009 ▸); Fun et al. (2009 ▸); Ghalib et al. (2011 ▸); Uk Kim et al. (2004 ▸); Penthala et al. (2009 ▸); Sundar et al. (2010 ▸); Yao et al. (2006a ▸,b ▸).

Experimental

Crystal data

C16H16O4 M = 272.29 Orthorhombic, a = 7.4131 (5) Å b = 18.8596 (13) Å c = 19.0166 (13) Å V = 2658.7 (3) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 294 K 0.30 × 0.23 × 0.18 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.978, T max = 0.986 28734 measured reflections 3191 independent reflections 2849 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.119 S = 1.03 3191 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015016126/xu5867sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016126/xu5867Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016126/xu5867Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016126/xu5867Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015016126/xu5867fig1.tif The mol­ecular structure of (I), with atom labels and 50% probability displacement ellipsoids for non-H atoms. Click here for additional data file. a . DOI: 10.1107/S2056989015016126/xu5867fig2.tif A view of the mol­ecular aggregation down the a axis. Ring systems and H atoms that are not involved in hydrogen bonding have been omitted for clarity. CCDC reference: 1421141 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H16O4Dx = 1.361 Mg m3Dm = 1.35 Mg m3Dm measured by floatation method
Mr = 272.29Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 7469 reflections
a = 7.4131 (5) Åθ = 2.4–27.8°
b = 18.8596 (13) ŵ = 0.10 mm1
c = 19.0166 (13) ÅT = 294 K
V = 2658.7 (3) Å3Needle, colourless
Z = 80.30 × 0.23 × 0.18 mm
F(000) = 1152
Bruker SMART APEXII CCD diffractometer2849 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
φ and ω scansθmax = 28.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.978, Tmax = 0.986k = −24→24
28734 measured reflectionsl = −24→25
3191 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0599P)2 + 0.7812P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3191 reflectionsΔρmax = 0.33 e Å3
185 parametersΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O11.03172 (15)0.08184 (7)0.44453 (5)0.0593 (3)
O20.56285 (14)0.19613 (6)0.45415 (5)0.0525 (3)
O30.60520 (16)0.04223 (5)0.41294 (5)0.0565 (3)
O40.93803 (17)0.25552 (5)0.41716 (5)0.0570 (3)
C10.68387 (16)0.09552 (6)0.39677 (6)0.0357 (3)
C20.73825 (16)0.11650 (6)0.32474 (6)0.0343 (3)
C30.70883 (18)0.08049 (8)0.26203 (7)0.0446 (3)
H30.65820.03540.26170.053*
C40.75714 (19)0.11383 (9)0.20020 (7)0.0509 (4)
H40.73830.09080.15760.061*
C50.83328 (19)0.18099 (9)0.20053 (6)0.0487 (3)
H50.86080.20280.15800.058*
C60.86906 (18)0.21611 (7)0.26286 (6)0.0427 (3)
H60.92380.26050.26310.051*
C70.82010 (16)0.18254 (6)0.32509 (6)0.0335 (2)
C80.84477 (17)0.20639 (6)0.39815 (6)0.0355 (3)
C90.72848 (16)0.15854 (6)0.44602 (6)0.0334 (2)
C100.81939 (16)0.14094 (6)0.51591 (6)0.0343 (2)
H100.83960.18550.54120.041*
C110.70788 (19)0.09172 (7)0.56410 (7)0.0434 (3)
H11A0.58070.10090.55630.052*
H11B0.73120.04290.55090.052*
C120.7486 (3)0.10069 (9)0.64220 (7)0.0589 (4)
H12A0.72600.14970.65490.071*
H12B0.66450.07160.66860.071*
C130.9388 (3)0.08166 (10)0.66515 (8)0.0679 (5)
H13A0.96070.03230.65340.081*
H13B0.94590.08600.71590.081*
C141.0880 (2)0.12630 (9)0.63284 (8)0.0594 (4)
H14A1.19380.12320.66270.071*
H14B1.04940.17540.63240.071*
C151.1415 (2)0.10527 (8)0.55851 (8)0.0547 (4)
H15A1.24010.13580.54410.066*
H15B1.18860.05730.56040.066*
C161.00134 (17)0.10759 (6)0.50196 (7)0.0380 (3)
H20.549 (3)0.2103 (10)0.4936 (11)0.070 (6)*
U11U22U33U12U13U23
O10.0519 (6)0.0860 (8)0.0399 (5)0.0216 (5)0.0051 (4)−0.0029 (5)
O20.0512 (6)0.0737 (7)0.0326 (5)0.0284 (5)0.0016 (4)−0.0022 (4)
O30.0654 (7)0.0510 (6)0.0530 (6)−0.0195 (5)−0.0038 (5)0.0066 (4)
O40.0843 (8)0.0484 (5)0.0381 (5)−0.0224 (5)−0.0097 (5)−0.0021 (4)
C10.0347 (6)0.0388 (6)0.0335 (6)0.0007 (4)−0.0020 (4)−0.0002 (4)
C20.0325 (5)0.0405 (6)0.0298 (5)0.0033 (4)−0.0018 (4)−0.0050 (4)
C30.0420 (7)0.0523 (7)0.0394 (7)0.0029 (5)−0.0053 (5)−0.0148 (5)
C40.0451 (7)0.0768 (10)0.0308 (6)0.0108 (7)−0.0049 (5)−0.0160 (6)
C50.0429 (7)0.0771 (9)0.0261 (6)0.0113 (6)0.0019 (5)0.0035 (6)
C60.0418 (6)0.0535 (7)0.0327 (6)0.0011 (5)0.0009 (5)0.0058 (5)
C70.0340 (5)0.0403 (6)0.0261 (5)0.0030 (4)−0.0009 (4)−0.0013 (4)
C80.0452 (6)0.0337 (5)0.0277 (5)0.0015 (5)−0.0028 (4)−0.0005 (4)
C90.0367 (6)0.0376 (5)0.0258 (5)0.0057 (4)0.0017 (4)−0.0003 (4)
C100.0399 (6)0.0372 (6)0.0257 (5)0.0024 (5)0.0003 (4)0.0015 (4)
C110.0440 (7)0.0514 (7)0.0348 (6)−0.0021 (5)0.0044 (5)0.0083 (5)
C120.0780 (11)0.0668 (9)0.0319 (6)−0.0066 (8)0.0087 (7)0.0102 (6)
C130.0937 (13)0.0668 (10)0.0431 (8)−0.0138 (9)−0.0193 (8)0.0195 (7)
C140.0743 (10)0.0544 (8)0.0494 (8)−0.0069 (7)−0.0244 (7)0.0063 (6)
C150.0475 (8)0.0568 (8)0.0597 (9)0.0069 (6)−0.0157 (7)−0.0008 (7)
C160.0379 (6)0.0400 (6)0.0360 (6)0.0004 (5)0.0017 (5)0.0066 (5)
O1—C161.2163 (16)C9—C101.5267 (15)
O2—C91.4262 (14)C10—C161.5118 (17)
O2—H20.80 (2)C10—C111.5442 (16)
O3—C11.2018 (15)C10—H100.9800
O4—C81.2113 (15)C11—C121.5249 (18)
C1—C21.4818 (16)C11—H11A0.9700
C1—C91.5489 (16)C11—H11B0.9700
C2—C71.3856 (17)C12—C131.519 (3)
C2—C31.3894 (16)C12—H12A0.9700
C3—C41.381 (2)C12—H12B0.9700
C3—H30.9300C13—C141.520 (3)
C4—C51.387 (2)C13—H13A0.9700
C4—H40.9300C13—H13B0.9700
C5—C61.3833 (18)C14—C151.521 (2)
C5—H50.9300C14—H14A0.9700
C6—C71.3904 (16)C14—H14B0.9700
C6—H60.9300C15—C161.4961 (19)
C7—C81.4718 (15)C15—H15A0.9700
C8—C91.5448 (16)C15—H15B0.9700
C9—O2—H2112.0 (14)C9—C10—H10107.9
O3—C1—C2126.28 (11)C11—C10—H10107.9
O3—C1—C9126.20 (11)C12—C11—C10113.91 (12)
C2—C1—C9107.22 (9)C12—C11—H11A108.8
C7—C2—C3120.82 (11)C10—C11—H11A108.8
C7—C2—C1110.77 (9)C12—C11—H11B108.8
C3—C2—C1128.33 (12)C10—C11—H11B108.8
C4—C3—C2117.88 (13)H11A—C11—H11B107.7
C4—C3—H3121.1C13—C12—C11115.93 (14)
C2—C3—H3121.1C13—C12—H12A108.3
C3—C4—C5121.17 (12)C11—C12—H12A108.3
C3—C4—H4119.4C13—C12—H12B108.3
C5—C4—H4119.4C11—C12—H12B108.3
C6—C5—C4121.29 (12)H12A—C12—H12B107.4
C6—C5—H5119.4C12—C13—C14115.37 (13)
C4—C5—H5119.4C12—C13—H13A108.4
C5—C6—C7117.47 (13)C14—C13—H13A108.4
C5—C6—H6121.3C12—C13—H13B108.4
C7—C6—H6121.3C14—C13—H13B108.4
C2—C7—C6121.30 (11)H13A—C13—H13B107.5
C2—C7—C8109.50 (10)C13—C14—C15114.90 (14)
C6—C7—C8129.20 (11)C13—C14—H14A108.5
O4—C8—C7125.90 (11)C15—C14—H14A108.5
O4—C8—C9126.13 (10)C13—C14—H14B108.5
C7—C8—C9107.96 (9)C15—C14—H14B108.5
O2—C9—C10113.19 (9)H14A—C14—H14B107.5
O2—C9—C8104.70 (9)C16—C15—C14118.64 (13)
C10—C9—C8113.18 (10)C16—C15—H15A107.7
O2—C9—C1105.26 (10)C14—C15—H15A107.7
C10—C9—C1116.99 (9)C16—C15—H15B107.7
C8—C9—C1102.19 (9)C14—C15—H15B107.7
C16—C10—C9109.36 (9)H15A—C15—H15B107.1
C16—C10—C11109.37 (9)O1—C16—C15120.34 (12)
C9—C10—C11114.26 (10)O1—C16—C10119.27 (11)
C16—C10—H10107.9C15—C16—C10120.38 (11)
O3—C1—C2—C7177.60 (13)O3—C1—C9—O2−76.24 (15)
C9—C1—C2—C73.64 (13)C2—C1—C9—O297.72 (11)
O3—C1—C2—C30.9 (2)O3—C1—C9—C1050.41 (17)
C9—C1—C2—C3−173.10 (12)C2—C1—C9—C10−135.63 (10)
C7—C2—C3—C4−2.52 (19)O3—C1—C9—C8174.60 (13)
C1—C2—C3—C4173.93 (12)C2—C1—C9—C8−11.44 (12)
C2—C3—C4—C50.3 (2)O2—C9—C10—C16−174.64 (10)
C3—C4—C5—C62.1 (2)C8—C9—C10—C16−55.70 (12)
C4—C5—C6—C7−2.2 (2)C1—C9—C10—C1662.72 (13)
C3—C2—C7—C62.51 (18)O2—C9—C10—C1162.41 (14)
C1—C2—C7—C6−174.52 (11)C8—C9—C10—C11−178.65 (10)
C3—C2—C7—C8−176.47 (11)C1—C9—C10—C11−60.24 (13)
C1—C2—C7—C86.50 (14)C16—C10—C11—C1283.76 (14)
C5—C6—C7—C2−0.13 (18)C9—C10—C11—C12−153.30 (12)
C5—C6—C7—C8178.63 (12)C10—C11—C12—C13−63.91 (18)
C2—C7—C8—O4166.80 (13)C11—C12—C13—C1462.5 (2)
C6—C7—C8—O4−12.1 (2)C12—C13—C14—C15−79.9 (2)
C2—C7—C8—C9−14.11 (13)C13—C14—C15—C1659.78 (19)
C6—C7—C8—C9167.02 (12)C14—C15—C16—O1−169.58 (14)
O4—C8—C9—O284.79 (15)C14—C15—C16—C109.5 (2)
C7—C8—C9—O2−94.30 (11)C9—C10—C16—O1−19.61 (16)
O4—C8—C9—C10−38.94 (17)C11—C10—C16—O1106.21 (14)
C7—C8—C9—C10141.98 (10)C9—C10—C16—C15161.33 (12)
O4—C8—C9—C1−165.63 (13)C11—C10—C16—C15−72.85 (15)
C7—C8—C9—C115.28 (12)
D—H···AD—HH···AD···AD—H···A
O2—H2···O4i0.80 (2)1.99 (2)2.7707 (13)163 (2)
C4—H4···O1ii0.932.483.2758 (17)144
C15—H15B···O3iii0.972.473.3998 (19)160
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H2O4i 0.80(2)1.99(2)2.7707(13)163(2)
C4H4O1ii 0.932.483.2758(17)144
C15H15BO3iii 0.972.473.3998(19)160

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

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6.  Crystal structure refinement with SHELXL.

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  7 in total

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