| Literature DB >> 26594436 |
Xin-Wei Shi1, Sheng-Kun Li2, Dang-Dang Li2, Qiang-Qiang Lu1.
Abstract
The title compound (common name: sclaral), C16H28O2, is a sclareolide derivative, which was synthesized from sclareolide itself. In the mol-ecule, the two six-membered rings, A and B, of the labdane skeleton adopt chair conformations and the five-membered O-containing heterocyclic ring C displays an envelope conformation, with the methine C atom of the fused C-C bond as the flap. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, forming chains propagating along [100].Entities:
Keywords: crystal structure; hydrogen bonding; sclaral; sclareolide
Year: 2015 PMID: 26594436 PMCID: PMC4647384 DOI: 10.1107/S2056989015016370
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C16H28O2 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2540 reflections |
| θ = 3.1–21.6° | |
| µ = 0.07 mm−1 | |
| Block, colourless | |
| 0.22 × 0.20 × 0.18 mm |
| Bruker SMART CCD diffractometer | 2658 independent reflections |
| Radiation source: fine-focus sealed tube | 2299 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 25.3°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 9607 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2658 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.40 e Å−3 |
| 1 restraint | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.0482 (3) | 0.86847 (19) | 0.67801 (12) | 0.0348 (5) | |
| C2 | 0.2058 (3) | 0.8474 (2) | 0.62309 (12) | 0.0392 (5) | |
| C3 | 0.3421 (3) | 0.7594 (2) | 0.65591 (13) | 0.0469 (6) | |
| H3A | 0.4488 | 0.7504 | 0.6235 | 0.056* | |
| H3B | 0.2825 | 0.6826 | 0.6612 | 0.056* | |
| C4 | 0.4067 (3) | 0.8050 (2) | 0.73202 (13) | 0.0443 (5) | |
| H4A | 0.4901 | 0.7471 | 0.7539 | 0.053* | |
| H4B | 0.4759 | 0.8783 | 0.7255 | 0.053* | |
| C5 | 0.2429 (3) | 0.82737 (18) | 0.78462 (12) | 0.0342 (5) | |
| C6 | 0.1029 (3) | 0.91962 (17) | 0.75332 (11) | 0.0339 (5) | |
| C7 | 0.1778 (4) | 1.04780 (19) | 0.74731 (14) | 0.0515 (6) | |
| H7A | 0.1100 | 1.0896 | 0.7098 | 0.077* | |
| H7B | 0.3078 | 1.0459 | 0.7347 | 0.077* | |
| H7C | 0.1620 | 1.0875 | 0.7937 | 0.077* | |
| C8 | −0.0711 (3) | 0.9208 (3) | 0.80299 (14) | 0.0519 (6) | |
| H8A | −0.1541 | 0.9836 | 0.7869 | 0.062* | |
| H8B | −0.1368 | 0.8460 | 0.7976 | 0.062* | |
| C9 | −0.0233 (4) | 0.9397 (3) | 0.88443 (15) | 0.0655 (8) | |
| H9A | 0.0283 | 1.0186 | 0.8910 | 0.079* | |
| H9B | −0.1363 | 0.9343 | 0.9136 | 0.079* | |
| C10 | 0.1147 (4) | 0.8493 (3) | 0.91114 (14) | 0.0620 (8) | |
| H10A | 0.0560 | 0.7717 | 0.9097 | 0.074* | |
| H10B | 0.1444 | 0.8665 | 0.9622 | 0.074* | |
| C11 | 0.2970 (3) | 0.8434 (2) | 0.86729 (13) | 0.0462 (6) | |
| C12 | 0.4061 (5) | 0.7330 (3) | 0.89311 (17) | 0.0775 (9) | |
| H12A | 0.5323 | 0.7377 | 0.8756 | 0.116* | |
| H12B | 0.3480 | 0.6628 | 0.8738 | 0.116* | |
| H12C | 0.4059 | 0.7298 | 0.9460 | 0.116* | |
| C13 | 0.4176 (4) | 0.9519 (3) | 0.88354 (15) | 0.0579 (7) | |
| H13A | 0.5198 | 0.9547 | 0.8494 | 0.087* | |
| H13B | 0.4652 | 0.9468 | 0.9329 | 0.087* | |
| H13C | 0.3438 | 1.0226 | 0.8786 | 0.087* | |
| C14 | −0.1012 (4) | 0.9213 (2) | 0.62815 (14) | 0.0520 (6) | |
| H14A | −0.0739 | 1.0033 | 0.6157 | 0.062* | |
| H14B | −0.2240 | 0.9166 | 0.6504 | 0.062* | |
| C15 | −0.0850 (3) | 0.8402 (2) | 0.56099 (14) | 0.0495 (6) | |
| H15 | −0.112 (4) | 0.884 (2) | 0.5155 (15) | 0.059* | |
| C16 | 0.3106 (4) | 0.9544 (3) | 0.59153 (15) | 0.0622 (7) | |
| H16A | 0.3743 | 0.9313 | 0.5472 | 0.093* | |
| H16B | 0.3997 | 0.9823 | 0.6270 | 0.093* | |
| H16C | 0.2234 | 1.0166 | 0.5805 | 0.093* | |
| H1 | 0.007 (3) | 0.7879 (18) | 0.6884 (10) | 0.024 (5)* | |
| H5 | 0.168 (3) | 0.751 (2) | 0.7848 (12) | 0.040 (6)* | |
| O1 | 0.1024 (2) | 0.79612 (16) | 0.56104 (8) | 0.0520 (5) | |
| O2 | −0.2051 (3) | 0.7454 (2) | 0.56902 (11) | 0.0678 (6) | |
| H1O | −0.242 (4) | 0.715 (3) | 0.5234 (11) | 0.081* |
| C1 | 0.0291 (10) | 0.0358 (11) | 0.0396 (11) | 0.0007 (9) | 0.0009 (9) | −0.0037 (9) |
| C2 | 0.0342 (10) | 0.0491 (12) | 0.0342 (11) | −0.0040 (10) | 0.0055 (10) | −0.0055 (10) |
| C3 | 0.0352 (11) | 0.0571 (14) | 0.0485 (14) | 0.0072 (11) | 0.0082 (11) | −0.0129 (11) |
| C4 | 0.0313 (10) | 0.0529 (13) | 0.0485 (14) | 0.0097 (10) | 0.0001 (10) | −0.0055 (10) |
| C5 | 0.0331 (10) | 0.0328 (10) | 0.0368 (11) | −0.0020 (9) | 0.0018 (9) | −0.0018 (9) |
| C6 | 0.0270 (9) | 0.0355 (10) | 0.0393 (11) | 0.0012 (9) | 0.0011 (9) | −0.0073 (9) |
| C7 | 0.0607 (15) | 0.0336 (12) | 0.0601 (15) | 0.0041 (11) | −0.0055 (13) | −0.0088 (11) |
| C8 | 0.0304 (11) | 0.0749 (16) | 0.0503 (14) | 0.0045 (11) | 0.0059 (11) | −0.0221 (13) |
| C9 | 0.0430 (13) | 0.104 (2) | 0.0498 (15) | −0.0091 (15) | 0.0137 (12) | −0.0322 (16) |
| C10 | 0.0613 (16) | 0.090 (2) | 0.0352 (13) | −0.0243 (16) | 0.0041 (13) | −0.0063 (13) |
| C11 | 0.0474 (13) | 0.0528 (13) | 0.0385 (12) | −0.0035 (11) | −0.0058 (11) | −0.0025 (10) |
| C12 | 0.092 (2) | 0.078 (2) | 0.0620 (18) | 0.0127 (19) | −0.0247 (18) | 0.0158 (15) |
| C13 | 0.0434 (13) | 0.0751 (17) | 0.0551 (15) | −0.0065 (13) | −0.0103 (13) | −0.0149 (14) |
| C14 | 0.0439 (13) | 0.0601 (15) | 0.0520 (14) | 0.0096 (12) | −0.0092 (12) | −0.0063 (12) |
| C15 | 0.0407 (12) | 0.0673 (15) | 0.0404 (13) | −0.0035 (12) | −0.0050 (11) | −0.0024 (12) |
| C16 | 0.0648 (16) | 0.0754 (18) | 0.0463 (14) | −0.0191 (15) | 0.0090 (14) | 0.0086 (13) |
| O1 | 0.0417 (8) | 0.0749 (11) | 0.0393 (9) | −0.0020 (9) | 0.0020 (8) | −0.0166 (8) |
| O2 | 0.0591 (11) | 0.0950 (15) | 0.0494 (11) | −0.0205 (11) | −0.0057 (10) | −0.0045 (10) |
| C1—C14 | 1.523 (3) | C6—C8 | 1.539 (3) |
| C1—C2 | 1.525 (3) | C6—C7 | 1.544 (3) |
| C1—C6 | 1.534 (3) | C8—C9 | 1.532 (4) |
| C2—O1 | 1.466 (3) | C9—C10 | 1.500 (4) |
| C2—C3 | 1.513 (3) | C10—C11 | 1.531 (3) |
| C2—C16 | 1.531 (3) | C11—C13 | 1.526 (3) |
| C3—C4 | 1.544 (3) | C11—C12 | 1.542 (4) |
| C4—C5 | 1.534 (3) | C14—C15 | 1.527 (3) |
| C5—C6 | 1.552 (3) | C15—O2 | 1.380 (3) |
| C5—C11 | 1.560 (3) | C15—O1 | 1.432 (3) |
| C14—C1—C2 | 101.16 (18) | C1—C6—C5 | 103.87 (16) |
| C14—C1—C6 | 124.19 (19) | C8—C6—C5 | 108.38 (18) |
| C2—C1—C6 | 116.81 (16) | C7—C6—C5 | 115.30 (17) |
| O1—C2—C3 | 111.75 (18) | C9—C8—C6 | 112.63 (18) |
| O1—C2—C1 | 100.87 (15) | C10—C9—C8 | 111.4 (2) |
| C3—C2—C1 | 108.84 (18) | C9—C10—C11 | 115.1 (2) |
| O1—C2—C16 | 105.71 (18) | C13—C11—C10 | 110.4 (2) |
| C3—C2—C16 | 110.26 (19) | C13—C11—C12 | 107.4 (2) |
| C1—C2—C16 | 119.00 (19) | C10—C11—C12 | 108.0 (2) |
| C2—C3—C4 | 109.12 (18) | C13—C11—C5 | 114.8 (2) |
| C5—C4—C3 | 112.42 (17) | C10—C11—C5 | 107.00 (18) |
| C4—C5—C6 | 112.15 (17) | C12—C11—C5 | 109.0 (2) |
| C4—C5—C11 | 115.27 (17) | C1—C14—C15 | 100.75 (19) |
| C6—C5—C11 | 115.79 (17) | O2—C15—O1 | 108.5 (2) |
| C1—C6—C8 | 108.51 (17) | O2—C15—C14 | 109.4 (2) |
| C1—C6—C7 | 112.17 (19) | O1—C15—C14 | 106.16 (19) |
| C8—C6—C7 | 108.36 (19) | C15—O1—C2 | 109.75 (17) |
| H··· | ||||
| O2—H1 | 0.93 (2) | 1.90 (2) | 2.773 (2) | 155 (3) |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O2H1 | 0.93(2) | 1.90(2) | 2.773(2) | 155(3) |
Symmetry code: (i) .