Literature DB >> 26594436

Crystal structure of 3a,6,6,9a-tetra-methyl-dodeca-hydro-naphtho-[2,1-b]furan-2-ol.

Xin-Wei Shi1, Sheng-Kun Li2, Dang-Dang Li2, Qiang-Qiang Lu1.   

Abstract

The title compound (common name: sclaral), C16H28O2, is a sclareolide derivative, which was synthesized from sclareolide itself. In the mol-ecule, the two six-membered rings, A and B, of the labdane skeleton adopt chair conformations and the five-membered O-containing heterocyclic ring C displays an envelope conformation, with the methine C atom of the fused C-C bond as the flap. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, forming chains propagating along [100].

Entities:  

Keywords:  crystal structure; hydrogen bonding; sclaral; sclareolide

Year:  2015        PMID: 26594436      PMCID: PMC4647384          DOI: 10.1107/S2056989015016370

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the chemistry and biological importance of sclareolides and the title compound, see: Dixon et al. (2012 ▸); Michaudel et al. (2015 ▸); Sun et al. (2013 ▸). For previously reported spectroscopic and anal­yt­ical data for the title compound, see: Margaros et al. (2007 ▸). For related structures, see: Martínez-Carrera et al. (1978 ▸); Huang et al. (2008 ▸).

Experimental

Crystal data

C16H28O2 M = 252.38 Orthorhombic, a = 7.1675 (8) Å b = 11.2654 (13) Å c = 18.144 (2) Å V = 1465.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.22 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▸) T min = 0.984, T max = 0.987 9607 measured reflections 2658 independent reflections 2299 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.08 2658 reflections 181 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.20 e Å−3

Data collection: SMART (Bruker, 2002 ▸); cell refinement: SAINT (Bruker, 2002 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015016370/su5201sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016370/su5201Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016370/su5201Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016370/su5201Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015016370/su5201fig1.tif A view of the mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015016370/su5201fig2.tif View along the a axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1), and C-bound H atoms have been omitted for clarity. CCDC reference: 1421899 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H28O2F(000) = 560
Mr = 252.38Dx = 1.144 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2540 reflections
a = 7.1675 (8) Åθ = 3.1–21.6°
b = 11.2654 (13) ŵ = 0.07 mm1
c = 18.144 (2) ÅT = 296 K
V = 1465.0 (3) Å3Block, colourless
Z = 40.22 × 0.20 × 0.18 mm
Bruker SMART CCD diffractometer2658 independent reflections
Radiation source: fine-focus sealed tube2299 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
phi and ω scansθmax = 25.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −8→8
Tmin = 0.984, Tmax = 0.987k = −13→13
9607 measured reflectionsl = −21→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0651P)2 + 0.258P] where P = (Fo2 + 2Fc2)/3
2658 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.40 e Å3
1 restraintΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0482 (3)0.86847 (19)0.67801 (12)0.0348 (5)
C20.2058 (3)0.8474 (2)0.62309 (12)0.0392 (5)
C30.3421 (3)0.7594 (2)0.65591 (13)0.0469 (6)
H3A0.44880.75040.62350.056*
H3B0.28250.68260.66120.056*
C40.4067 (3)0.8050 (2)0.73202 (13)0.0443 (5)
H4A0.49010.74710.75390.053*
H4B0.47590.87830.72550.053*
C50.2429 (3)0.82737 (18)0.78462 (12)0.0342 (5)
C60.1029 (3)0.91962 (17)0.75332 (11)0.0339 (5)
C70.1778 (4)1.04780 (19)0.74731 (14)0.0515 (6)
H7A0.11001.08960.70980.077*
H7B0.30781.04590.73470.077*
H7C0.16201.08750.79370.077*
C8−0.0711 (3)0.9208 (3)0.80299 (14)0.0519 (6)
H8A−0.15410.98360.78690.062*
H8B−0.13680.84600.79760.062*
C9−0.0233 (4)0.9397 (3)0.88443 (15)0.0655 (8)
H9A0.02831.01860.89100.079*
H9B−0.13630.93430.91360.079*
C100.1147 (4)0.8493 (3)0.91114 (14)0.0620 (8)
H10A0.05600.77170.90970.074*
H10B0.14440.86650.96220.074*
C110.2970 (3)0.8434 (2)0.86729 (13)0.0462 (6)
C120.4061 (5)0.7330 (3)0.89311 (17)0.0775 (9)
H12A0.53230.73770.87560.116*
H12B0.34800.66280.87380.116*
H12C0.40590.72980.94600.116*
C130.4176 (4)0.9519 (3)0.88354 (15)0.0579 (7)
H13A0.51980.95470.84940.087*
H13B0.46520.94680.93290.087*
H13C0.34381.02260.87860.087*
C14−0.1012 (4)0.9213 (2)0.62815 (14)0.0520 (6)
H14A−0.07391.00330.61570.062*
H14B−0.22400.91660.65040.062*
C15−0.0850 (3)0.8402 (2)0.56099 (14)0.0495 (6)
H15−0.112 (4)0.884 (2)0.5155 (15)0.059*
C160.3106 (4)0.9544 (3)0.59153 (15)0.0622 (7)
H16A0.37430.93130.54720.093*
H16B0.39970.98230.62700.093*
H16C0.22341.01660.58050.093*
H10.007 (3)0.7879 (18)0.6884 (10)0.024 (5)*
H50.168 (3)0.751 (2)0.7848 (12)0.040 (6)*
O10.1024 (2)0.79612 (16)0.56104 (8)0.0520 (5)
O2−0.2051 (3)0.7454 (2)0.56902 (11)0.0678 (6)
H1O−0.242 (4)0.715 (3)0.5234 (11)0.081*
U11U22U33U12U13U23
C10.0291 (10)0.0358 (11)0.0396 (11)0.0007 (9)0.0009 (9)−0.0037 (9)
C20.0342 (10)0.0491 (12)0.0342 (11)−0.0040 (10)0.0055 (10)−0.0055 (10)
C30.0352 (11)0.0571 (14)0.0485 (14)0.0072 (11)0.0082 (11)−0.0129 (11)
C40.0313 (10)0.0529 (13)0.0485 (14)0.0097 (10)0.0001 (10)−0.0055 (10)
C50.0331 (10)0.0328 (10)0.0368 (11)−0.0020 (9)0.0018 (9)−0.0018 (9)
C60.0270 (9)0.0355 (10)0.0393 (11)0.0012 (9)0.0011 (9)−0.0073 (9)
C70.0607 (15)0.0336 (12)0.0601 (15)0.0041 (11)−0.0055 (13)−0.0088 (11)
C80.0304 (11)0.0749 (16)0.0503 (14)0.0045 (11)0.0059 (11)−0.0221 (13)
C90.0430 (13)0.104 (2)0.0498 (15)−0.0091 (15)0.0137 (12)−0.0322 (16)
C100.0613 (16)0.090 (2)0.0352 (13)−0.0243 (16)0.0041 (13)−0.0063 (13)
C110.0474 (13)0.0528 (13)0.0385 (12)−0.0035 (11)−0.0058 (11)−0.0025 (10)
C120.092 (2)0.078 (2)0.0620 (18)0.0127 (19)−0.0247 (18)0.0158 (15)
C130.0434 (13)0.0751 (17)0.0551 (15)−0.0065 (13)−0.0103 (13)−0.0149 (14)
C140.0439 (13)0.0601 (15)0.0520 (14)0.0096 (12)−0.0092 (12)−0.0063 (12)
C150.0407 (12)0.0673 (15)0.0404 (13)−0.0035 (12)−0.0050 (11)−0.0024 (12)
C160.0648 (16)0.0754 (18)0.0463 (14)−0.0191 (15)0.0090 (14)0.0086 (13)
O10.0417 (8)0.0749 (11)0.0393 (9)−0.0020 (9)0.0020 (8)−0.0166 (8)
O20.0591 (11)0.0950 (15)0.0494 (11)−0.0205 (11)−0.0057 (10)−0.0045 (10)
C1—C141.523 (3)C6—C81.539 (3)
C1—C21.525 (3)C6—C71.544 (3)
C1—C61.534 (3)C8—C91.532 (4)
C2—O11.466 (3)C9—C101.500 (4)
C2—C31.513 (3)C10—C111.531 (3)
C2—C161.531 (3)C11—C131.526 (3)
C3—C41.544 (3)C11—C121.542 (4)
C4—C51.534 (3)C14—C151.527 (3)
C5—C61.552 (3)C15—O21.380 (3)
C5—C111.560 (3)C15—O11.432 (3)
C14—C1—C2101.16 (18)C1—C6—C5103.87 (16)
C14—C1—C6124.19 (19)C8—C6—C5108.38 (18)
C2—C1—C6116.81 (16)C7—C6—C5115.30 (17)
O1—C2—C3111.75 (18)C9—C8—C6112.63 (18)
O1—C2—C1100.87 (15)C10—C9—C8111.4 (2)
C3—C2—C1108.84 (18)C9—C10—C11115.1 (2)
O1—C2—C16105.71 (18)C13—C11—C10110.4 (2)
C3—C2—C16110.26 (19)C13—C11—C12107.4 (2)
C1—C2—C16119.00 (19)C10—C11—C12108.0 (2)
C2—C3—C4109.12 (18)C13—C11—C5114.8 (2)
C5—C4—C3112.42 (17)C10—C11—C5107.00 (18)
C4—C5—C6112.15 (17)C12—C11—C5109.0 (2)
C4—C5—C11115.27 (17)C1—C14—C15100.75 (19)
C6—C5—C11115.79 (17)O2—C15—O1108.5 (2)
C1—C6—C8108.51 (17)O2—C15—C14109.4 (2)
C1—C6—C7112.17 (19)O1—C15—C14106.16 (19)
C8—C6—C7108.36 (19)C15—O1—C2109.75 (17)
D—H···AD—HH···AD···AD—H···A
O2—H1O···O1i0.93 (2)1.90 (2)2.773 (2)155 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H1OO1i 0.93(2)1.90(2)2.773(2)155(3)

Symmetry code: (i) .

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