| Literature DB >> 26594415 |
Mukesh M Jotani1, Chien Ing Yeo2, Edward R T Tiekink3.
Abstract
In the title class="Chemical">thio-semicarbazone,Entities:
Keywords: Hirshfeld surface analysis; crystal structure; hydrogen bonding; thiosemicarbazone; thiourea derivative
Year: 2015 PMID: 26594415 PMCID: PMC4647415 DOI: 10.1107/S2056989015017624
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing displacement ellipsoids at the 70% probability level.
Hydrogen-bond geometry (, )
Cg1 is the centroid of the C2C7 ring.
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1 | 0.88(1) | 2.09(2) | 2.572(2) | 114(1) |
| N1H1 | 0.88(1) | 2.87(2) | 3.5618(17) | 137(2) |
| N2H2 | 0.88(2) | 2.57(2) | 3.4373(16) | 169(2) |
| C8H8 | 0.98 | 2.81 | 3.716(2) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) .
Geometric data (, ) for (I) and two polymorphs of (II)
| Parameter | (I) | Form | Form |
|---|---|---|---|
| N2N3 | 1.397(2) | 1.386(2) | 1.392(2) |
| C1S1 | 1.6873(18) | 1.6816(17) | 1.6826(17) |
| C1N1 | 1.350(2) | 1.337(2) | 1.343(2) |
| C1N2 | 1.350(2) | 1.359(2) | 1.348(2) |
| C2N1 | 1.422(2) | 1.420(2) | 1.425(2) |
| C9N3 | 1.280(2) | 1.279(2) | 1.276(2) |
| C1N1C2 | 127.79(16) | 129.98(14) | 127.97(14) |
| C1N2N3 | 117.72(15) | 118.17(14) | 118.33(14) |
| N2N3C9 | 117.91(15) | 118.85(15) | 117.73(14) |
| S1C1N1 | 125.45(14) | 126.00(13) | 125.75(13) |
| S1C1N2 | 120.00(14) | 119.37(13) | 119.50(12) |
| N1C1N2 | 114.54(16) | 114.63(15) | 114.74(15) |
| S1C1N2N3 | 169.57(12) | 177.46(12) | 170.56(12) |
| C1N1C2C3 | 132.2(2) | 153.87(18) | 131.10(19) |
| C1N2N3C9 | 165.78(16) | 168.43(16) | 165.85(15) |
| CN2S / C3N | 23.49(4) | 13.19(8) | 22.42(9) |
| CN2S / aryl | 43.30(5) | 39.26(6) | 43.90(6) |
| C3N / aryl | 29.27(8) | 40.15(8) | 30.18(8) |
Notes: (a) Jian et al. (2005 ▸); (b) Venkatraman et al. (2005 ▸).
Figure 2Overlay diagram of the molecules in (I), red image, and (II), forms a (green) and b (blue). The molecules have been overlapped so that the central NC(=S)N chromophores are coincident.
Figure 3Supramolecular layer in the bc plane in the crystal packing of (I). Centrosymmetric aggregates mediated by eight-membered thioamide {⋯HNCS}2 synthons (shown as orange dashed lines) are linked by additional amide-N—H⋯S hydrogen bonds, shown as blue dashed lines.
Figure 4A view of the unit cell contents of (I) shown in projection down the b axis. Supramolecular layers, illustrated in Fig. 3 ▸, are linked via C—H⋯π interactions, shown as purple dashed lines, leading to a three-dimensional architecture.
Figure 5Views of the Hirshfeld surface for (I): (a) and (b) mapped over d norm, and (c) mapped over the calculated electrostatic potential.
Figure 62D Fingerprint plots for (I): (a) full, (b) delineated to show S⋯H/H⋯S, (c) N⋯H/H⋯N, (d) C⋯H/H⋯C, and (e) H⋯H interactions.
Relative contribution (%) to intermolecular interactions calculated from the Hirshfeld surface
| Contact | Contribution |
|---|---|
| HH | 57.0 |
| SH/HS | 15.2 |
| NH/HN | 5.5 |
| CH/HC | 19.1 |
| CC | 0.7 |
| NN | 1.4 |
| CN | 0.8 |
| CS | 0.2 |
| others | 0.1 |
Figure 7View of the Hirshfeld surface for (I) mapped over d e.
Figure 8Hirshfeld surfaces for (I) mapped over curvedness.
Experimental details
| Crystal data | |
| Chemical formula | C11H15N3S |
|
| 221.32 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 13.7289(13), 7.4341(7), 11.5757(11) |
| () | 102.690(1) |
|
| 1152.58(19) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.25 |
| Crystal size (mm) | 0.12 0.05 0.03 |
| Data collection | |
| Diffractometer | Bruker SMART APEX CCD |
| Absorption correction | Multi-scan ( |
|
| 0.970, 0.993 |
| No. of measured, independent and observed [ | 10739, 2646, 2052 |
|
| 0.050 |
| (sin /)max (1) | 0.650 |
| Refinement | |
|
| 0.041, 0.098, 1.02 |
| No. of reflections | 2646 |
| No. of parameters | 147 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.27, 0.27 |
Computer programs: APEX2 and SAINT (Bruker, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), QMol (Gans Shalloway, 2001 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C11H15N3S | |
| Monoclinic, | Mo |
| Cell parameters from 1590 reflections | |
| θ = 3.0–25.5° | |
| µ = 0.25 mm−1 | |
| β = 102.690 (1)° | |
| Prism, light-brown | |
| 0.12 × 0.05 × 0.03 mm |
| Bruker SMART APEX CCD diffractometer | 2646 independent reflections |
| Radiation source: fine-focus sealed tube | 2052 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 10739 measured reflections |
| Refinement on | 2 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2646 reflections | Δρmax = 0.27 e Å−3 |
| 147 parameters | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.14991 (3) | 0.10760 (6) | 0.53754 (4) | 0.01865 (13) | |
| N1 | 0.17657 (11) | 0.1754 (2) | 0.31707 (14) | 0.0179 (3) | |
| H1N | 0.1468 (14) | 0.175 (3) | 0.2419 (9) | 0.023 (6)* | |
| N2 | 0.01790 (11) | 0.1178 (2) | 0.33437 (14) | 0.0174 (3) | |
| H2N | −0.0236 (13) | 0.073 (3) | 0.3744 (17) | 0.032 (6)* | |
| N3 | −0.00516 (11) | 0.1118 (2) | 0.21071 (13) | 0.0177 (3) | |
| C1 | 0.11491 (13) | 0.1348 (2) | 0.38949 (16) | 0.0158 (4) | |
| C2 | 0.28274 (13) | 0.1793 (2) | 0.34532 (16) | 0.0174 (4) | |
| C3 | 0.33249 (14) | 0.0928 (3) | 0.26883 (17) | 0.0218 (4) | |
| H3 | 0.2955 | 0.0313 | 0.2013 | 0.026* | |
| C4 | 0.43587 (14) | 0.0956 (3) | 0.29054 (17) | 0.0240 (4) | |
| H4 | 0.4688 | 0.0357 | 0.2374 | 0.029* | |
| C5 | 0.49234 (14) | 0.1841 (3) | 0.38822 (17) | 0.0218 (4) | |
| C6 | 0.44118 (15) | 0.2713 (3) | 0.46362 (18) | 0.0240 (4) | |
| H6 | 0.4781 | 0.3329 | 0.5311 | 0.029* | |
| C7 | 0.33772 (14) | 0.2703 (3) | 0.44266 (17) | 0.0221 (4) | |
| H7 | 0.3046 | 0.3319 | 0.4949 | 0.027* | |
| C8 | 0.60488 (15) | 0.1844 (3) | 0.4134 (2) | 0.0316 (5) | |
| H8A | 0.6299 | 0.3006 | 0.4475 | 0.047* | |
| H8B | 0.6271 | 0.1650 | 0.3395 | 0.047* | |
| H8C | 0.6307 | 0.0880 | 0.4695 | 0.047* | |
| C9 | −0.09645 (13) | 0.1333 (2) | 0.15732 (16) | 0.0163 (4) | |
| C10 | −0.18214 (14) | 0.1717 (3) | 0.21420 (17) | 0.0220 (4) | |
| H10A | −0.1571 | 0.2260 | 0.2922 | 0.033* | |
| H10B | −0.2169 | 0.0592 | 0.2233 | 0.033* | |
| H10C | −0.2285 | 0.2549 | 0.1643 | 0.033* | |
| C11 | −0.11855 (14) | 0.1185 (3) | 0.02523 (16) | 0.0201 (4) | |
| H11A | −0.0561 | 0.1262 | −0.0024 | 0.030* | |
| H11B | −0.1631 | 0.2166 | −0.0096 | 0.030* | |
| H11C | −0.1509 | 0.0028 | 0.0011 | 0.030* |
| S1 | 0.0168 (2) | 0.0218 (2) | 0.0167 (2) | −0.00133 (19) | 0.00219 (18) | 0.00207 (18) |
| N1 | 0.0133 (8) | 0.0252 (8) | 0.0149 (8) | −0.0017 (6) | 0.0020 (6) | 0.0013 (7) |
| N2 | 0.0148 (8) | 0.0226 (8) | 0.0149 (8) | −0.0018 (6) | 0.0033 (6) | 0.0014 (6) |
| N3 | 0.0182 (8) | 0.0196 (8) | 0.0152 (8) | −0.0022 (6) | 0.0037 (6) | 0.0000 (6) |
| C1 | 0.0149 (9) | 0.0129 (8) | 0.0196 (9) | 0.0003 (7) | 0.0041 (7) | 0.0007 (7) |
| C2 | 0.0151 (9) | 0.0177 (8) | 0.0194 (9) | −0.0003 (7) | 0.0040 (7) | 0.0046 (7) |
| C3 | 0.0200 (10) | 0.0272 (10) | 0.0181 (10) | −0.0009 (8) | 0.0043 (8) | 0.0008 (8) |
| C4 | 0.0194 (10) | 0.0308 (11) | 0.0239 (11) | 0.0016 (8) | 0.0092 (8) | 0.0014 (8) |
| C5 | 0.0171 (10) | 0.0233 (9) | 0.0247 (10) | −0.0006 (8) | 0.0038 (8) | 0.0080 (8) |
| C6 | 0.0203 (10) | 0.0258 (10) | 0.0245 (11) | −0.0051 (8) | 0.0018 (8) | −0.0010 (8) |
| C7 | 0.0206 (10) | 0.0224 (9) | 0.0251 (11) | −0.0026 (8) | 0.0087 (8) | −0.0040 (8) |
| C8 | 0.0172 (10) | 0.0364 (12) | 0.0408 (13) | −0.0008 (9) | 0.0053 (9) | 0.0085 (10) |
| C9 | 0.0182 (9) | 0.0121 (8) | 0.0186 (9) | −0.0004 (7) | 0.0041 (7) | 0.0009 (7) |
| C10 | 0.0178 (10) | 0.0288 (10) | 0.0179 (10) | 0.0056 (8) | 0.0009 (8) | 0.0009 (8) |
| C11 | 0.0199 (10) | 0.0228 (9) | 0.0167 (9) | −0.0008 (8) | 0.0020 (8) | 0.0004 (7) |
| S1—C1 | 1.6873 (18) | C5—C8 | 1.508 (3) |
| N1—C1 | 1.350 (2) | C6—C7 | 1.387 (3) |
| N1—C2 | 1.422 (2) | C6—H6 | 0.9500 |
| N1—H1N | 0.876 (9) | C7—H7 | 0.9500 |
| N2—C1 | 1.350 (2) | C8—H8A | 0.9800 |
| N2—N3 | 1.397 (2) | C8—H8B | 0.9800 |
| N2—H2N | 0.875 (9) | C8—H8C | 0.9800 |
| N3—C9 | 1.280 (2) | C9—C11 | 1.496 (2) |
| C2—C7 | 1.387 (3) | C9—C10 | 1.496 (3) |
| C2—C3 | 1.389 (3) | C10—H10A | 0.9800 |
| C3—C4 | 1.386 (3) | C10—H10B | 0.9800 |
| C3—H3 | 0.9500 | C10—H10C | 0.9800 |
| C4—C5 | 1.388 (3) | C11—H11A | 0.9800 |
| C4—H4 | 0.9500 | C11—H11B | 0.9800 |
| C5—C6 | 1.395 (3) | C11—H11C | 0.9800 |
| C1—N1—C2 | 127.79 (16) | C2—C7—C6 | 119.87 (18) |
| C1—N1—H1N | 113.3 (14) | C2—C7—H7 | 120.1 |
| C2—N1—H1N | 117.3 (14) | C6—C7—H7 | 120.1 |
| C1—N2—N3 | 117.72 (15) | C5—C8—H8A | 109.5 |
| C1—N2—H2N | 118.4 (15) | C5—C8—H8B | 109.5 |
| N3—N2—H2N | 120.2 (15) | H8A—C8—H8B | 109.5 |
| C9—N3—N2 | 117.91 (15) | C5—C8—H8C | 109.5 |
| N1—C1—N2 | 114.54 (16) | H8A—C8—H8C | 109.5 |
| N1—C1—S1 | 125.45 (14) | H8B—C8—H8C | 109.5 |
| N2—C1—S1 | 120.00 (14) | N3—C9—C11 | 116.21 (16) |
| C7—C2—C3 | 119.20 (17) | N3—C9—C10 | 126.34 (17) |
| C7—C2—N1 | 122.98 (17) | C11—C9—C10 | 117.46 (16) |
| C3—C2—N1 | 117.79 (17) | C9—C10—H10A | 109.5 |
| C4—C3—C2 | 120.30 (18) | C9—C10—H10B | 109.5 |
| C4—C3—H3 | 119.9 | H10A—C10—H10B | 109.5 |
| C2—C3—H3 | 119.9 | C9—C10—H10C | 109.5 |
| C3—C4—C5 | 121.42 (18) | H10A—C10—H10C | 109.5 |
| C3—C4—H4 | 119.3 | H10B—C10—H10C | 109.5 |
| C5—C4—H4 | 119.3 | C9—C11—H11A | 109.5 |
| C4—C5—C6 | 117.52 (17) | C9—C11—H11B | 109.5 |
| C4—C5—C8 | 121.55 (18) | H11A—C11—H11B | 109.5 |
| C6—C5—C8 | 120.92 (18) | C9—C11—H11C | 109.5 |
| C7—C6—C5 | 121.69 (18) | H11A—C11—H11C | 109.5 |
| C7—C6—H6 | 119.2 | H11B—C11—H11C | 109.5 |
| C5—C6—H6 | 119.2 | ||
| C1—N2—N3—C9 | −165.78 (16) | C3—C4—C5—C6 | −0.4 (3) |
| C2—N1—C1—N2 | −171.29 (17) | C3—C4—C5—C8 | 178.82 (19) |
| C2—N1—C1—S1 | 9.3 (3) | C4—C5—C6—C7 | 0.0 (3) |
| N3—N2—C1—N1 | 11.0 (2) | C8—C5—C6—C7 | −179.16 (18) |
| N3—N2—C1—S1 | −169.57 (12) | C3—C2—C7—C6 | −1.1 (3) |
| C1—N1—C2—C7 | −50.1 (3) | N1—C2—C7—C6 | −178.81 (17) |
| C1—N1—C2—C3 | 132.2 (2) | C5—C6—C7—C2 | 0.7 (3) |
| C7—C2—C3—C4 | 0.8 (3) | N2—N3—C9—C11 | −177.62 (15) |
| N1—C2—C3—C4 | 178.60 (17) | N2—N3—C9—C10 | 2.4 (3) |
| C2—C3—C4—C5 | 0.0 (3) |
| H··· | ||||
| N1—H1 | 0.88 (1) | 2.09 (2) | 2.572 (2) | 114 (1) |
| N1—H1 | 0.88 (1) | 2.87 (2) | 3.5618 (17) | 137 (2) |
| N2—H2 | 0.88 (2) | 2.57 (2) | 3.4373 (16) | 169 (2) |
| C8—H8 | 0.98 | 2.81 | 3.716 (2) | 154 |