Literature DB >> 26594396

Crystal structures of 5-amino-N-phenyl-3H-1,2,4-di-thia-zol-3-iminium chloride and 5-amino-N-(4-chloro-phen-yl)-3H-1,2,4-di-thia-zol-3-iminium chloride monohydrate.

Chien Ing Yeo1, Yee Seng Tan1, Edward R T Tiekink2.   

Abstract

The crystal and mol-ecular structures of the title salt, C8H8N3S2 (+)·Cl(-), (I), and salt hydrate, C8H7ClN3S2 (+)·Cl(-)·H2O, (II), are described. The heterocyclic ring in (I) is statistically planar and forms a dihedral angle of 9.05 (12)° with the pendant phenyl ring. The comparable angle in (II) is 15.60 (12)°, indicating a greater twist in this cation. An evaluation of the bond lengths in the H2N-C-N-C-N sequence of each cation indicates significant delocalization of π-electron density over these atoms. The common feature of the crystal packing in (I) and (II) is the formation of charge-assisted amino-N-H⋯Cl(-) hydrogen bonds, leading to helical chains in (I) and zigzag chains in (II). In (I), these are linked by chains mediated by charge-assisted iminium-N(+)-H⋯Cl(-) hydrogen bonds into a three-dimensional architecture. In (II), the chains are linked into a layer by charge-assisted water-O-H⋯Cl(-) and water-O-H⋯O(water) hydrogen bonds with charge-assisted iminium-N(+)-H⋯O(water) hydrogen bonds providing the connections between the layers to generate the three-dimensional packing. In (II), the chloride anion and water mol-ecules are resolved into two proximate sites with the major component being present with a site occupancy factor of 0.9327 (18).

Entities:  

Keywords:  crystal structure; di­thia­zole ring; hydrogen bonding; salt

Year:  2015        PMID: 26594396      PMCID: PMC4647351          DOI: 10.1107/S2056989015016655

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The title salts were isolated as a part of a research programme into the crystal engineering aspects and biological potential of phosphanegold(I) carbonimido­thio­ates, i.e. mol­ecules of the general formula R 3PAu[SC(OR′)=NR′′]; R, R′, R′′ = aryl and/or alkyl. While earlier work focussed on supra­molecular aggregation patterns (Kuan et al., 2008 ▸) and solid-state luminescence (Ho et al., 2006 ▸), more recent endeavours have focussed upon biological studies. For example, the Ph3PAu[SC(O–alk­yl)=N(p-tol­yl)] compounds prove to be very potent against Gram-positive bacteria (Yeo, Sim et al., 2013 ▸). In addition, Ph3PAu[SC(O–alk­yl)=N(ar­yl)] com­pounds exhibit significant cytotoxicity and kill cancer cells by initiating a variety of apoptotic pathways (Yeo, Ooi et al., 2013 ▸; Ooi, Yeo et al., 2015 ▸). A focus of recent synthetic efforts has been to increase the functionality of the thio­carbamide mol­ecules in order to produce gold complexes of higher nuclear­ity. During this work bipodal {1,4-[MeOC(=S)N(H)]2C6H4} was synthesized along with its binuclear phosphanegold(I) complexes (Yeo et al., 2015 ▸). As an expansion of these studies, the 1:2 reactions of thio­urea with aryl­iso­thio­cyanates were undertaken which, rather than yielding bipodal mol­ecules, gave the 1:1 cyclization products, isolated as salts. These and related compounds have been described in the patent literature as having a range of biological properties, e.g. as bactericides, fungicides and plant-growth inhibitors (Röthling et al., 1989 ▸). Herein, the crystal and mol­ecular structures of two examples of these products, i.e. the salt, [C8H8N3S2]Cl (I), and the salt hydrate [C8H7ClN3S2]Cl·H2O (II), are described.

Structural commentary

The asymmetric unit of (I), comprising a cation and chloride anion, is shown in Fig. 1 ▸. The five-membered 1,2,4-di­thia­zole ring of the cation in (I) is strictly planar with the maximum deviation being less than ±0.003 (2) Å. However, the entire cation is not planar with the dihedral angle between the rings being 9.05 (12)°. Selected geometric parameters are collected in Table 1 ▸. While the S—S and S—C bond lengths correspond to single bonds, an evaluation of the C—N bonds, inter­nal and external to the ring, suggest a high level of delocalization of π-electron density across these atoms. The angles subtended at the S atoms are nearly right-angles. The trigonal angles around the C1 atom are all approximately 120° but there is a range of 10° for the angles about the C2 atom, with the widest angle being N2—C2—N3, consistent with double-bond character in the C—N bonds. The widest angle in the mol­ecule is that subtended at the N3 atom, an observation that correlates with the C2=N3 double bond and the presence of the small H atom on the N3 atom.
Figure 1

The asymmetric unit for (I), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The dashed lines indicate hydrogen bonds.

Table 1

Geometric data (Å, °) for (I) and (II)

Parameter(I)(II)
S1—S22.0669 (10)2.0657 (12)
S1—C11.769 (3)1.749 (3)
S2—C21.772 (3)1.763 (3)
N1—C11.309 (3)1.305 (4)
N2—C11.328 (3)1.337 (4)
N2—C21.317 (3)1.312 (4)
N3—C21.328 (3)1.332 (4)
N3—C31.418 (3)1.424 (4)
   
C1—S1—S292.63 (9)92.68 (11)
C2—S2—S192.72 (10)92.85 (11)
C2—N2—C1115.1 (2)115.1 (2)
C2—N3—C3130.4 (2)128.0 (3)
N1—C1—N2122.5 (2)120.8 (3)
N1—C1—S1117.8 (2)119.5 (2)
N2—C1—S1119.7 (2)119.8 (2)
N2—C2—N3125.2 (2)123.4 (3)
N2—C2—S2119.8 (2)119.6 (2)
N3—C2—S2115.1 (2)117.0 (2)
The asymmetric unit of (II), comprising a cation, a chloride anion and a water mol­ecule of crystallization, is illustrated in Fig. 2 ▸. As for (I), the cation is almost planar with the maximum deviation being 0.010 (2) Å for the N2 atom; the r.m.s. deviation for the fitted atoms is 0.010 Å. A greater overall twist in the mol­ecule is evident, as seen in the dihedral angle of 15.60 (12)° formed between the rings. In terms of bond lengths, Table 1 ▸, the discussion above for (I), holds true for (II). Similarly, for the bond angles except that the range of angles about the C2 atom is narrower at 6°.
Figure 2

The asymmetric unit for (II), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The dashed lines indicate hydrogen bonds.

Fig. 3 ▸ presents an overlay diagram of the cations in each of (I) and (II) which highlights the similarity in their mol­ecular structures.
Figure 3

Overlay diagram of the cations in (I), red image, and (II), blue image. The cations have been overlapped so that the five-membered rings are coincident.

Supra­molecular features

Geometric parameters characterizing the inter­molecular inter­actions operating in the crystal structures of (I) and (II) are collected in Tables 2 ▸ and 3 ▸, respectively.
Table 2

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯Cl1i 0.87 (2)2.36 (2)3.215 (2)170 (3)
N1—H2N⋯Cl1ii 0.88 (2)2.29 (2)3.131 (3)159 (3)
N3—H3N⋯Cl10.88 (2)2.22 (2)3.084 (2)169 (2)

Symmetry codes: (i) ; (ii) .

Table 3

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯Cl2i 0.88 (3)2.30 (3)3.144 (3)161 (3)
N1—H2N⋯Cl20.88 (2)2.22 (1)3.089 (2)172 (4)
N3—H3N⋯O1W 0.88 (2)2.06 (2)2.927 (4)174 (3)
O1W—H2O⋯O1W ii 0.84 (3)2.29 (4)2.884 (4)128 (3)
O1W—H1O⋯Cl2iii 0.85 (3)2.16 (3)3.005 (3)170 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

The presence of charge-assisted N—H⋯Cl− and N+—H⋯Cl− hydrogen bonds are crucial in establishing the three-dimensional architecture in the crystal structure of (I). The structure is conveniently described as comprising columns of cations aligned along the a axis connected through hydrogen bonds to rows of chloride ions, also aligned along the a axis. As illustrated in Fig. 4 ▸, charge-assisted amino-N—H⋯Cl− hydrogen bonds lead to helical chains along [100], being generated by 21 screw symmetry. The chains are linked to neighbouring chains by charge-assisted iminium-N+—H⋯Cl− hydrogen bonds, that in themselves lead to chains aligned along [011]. In this way, a three-dimensional architecture is constructed as shown in projection in Fig. 5 ▸.
Figure 4

Detail of the hydrogen bonding operating in the crystal structure of (I). The charge-assisted amino-N—H⋯Cl− hydrogen bonds are shown as orange dashed lines and lead to helical chains along [100]. The charge-assisted imino-N+—H⋯Cl− hydrogen bonds are shown as blue dashed lines and lead to chains along [011]. For reasons of clarity, H atoms not involved in hydrogen bonding have been omitted and only one of the chains along [011] is shown.

Figure 5

Unit-cell contents for (I) shown in projection down the a axis. The charge-assisted amino-N—H⋯Cl− and imino-N+—H⋯Cl− hydrogen bonds are shown as orange and blue dashed lines, respectively.

A more complicated pattern of hydrogen bonding occurs in the crystal structure of (II). The amino-H atoms form charge-assisted N—H⋯Cl− hydrogen bonds while the iminium-H atom forms a charge-assisted N+—H⋯O hydrogen bond to the water mol­ecule of crystallization. The water mol­ecule also forms two donor inter­actions, one to another water mol­ecule and the second, charge-assisted, to the chloride anion. Hence, all donor atoms participate in the hydrogen-bonding scheme and each of the chloride and water species forms three hydrogen bonds. A diagram showing the detail of the hydrogen bonding is shown in Fig. 6 ▸. The amino-N—H⋯Cl− bridges clearly persist, as for (I), but lead to zigzag chains (glide symmetry) along the c axis. As pairs of water mol­ecules are linked via water-O—H⋯O(water) hydrogen bonds across a centre of inversion and each forms a charge-assisted water-O—H⋯Cl− hydrogen bond, the water mol­ecules form links between the zigzag chains resulting in supra­molecular layers. Finally, the water mol­ecules accept charge-assisted imino-N+—H⋯O(water) hydrogen bonds, providing links between the layers so that a three-dimensional architecture ensues. As seen from Fig. 7 ▸, globally, the structure may be described as comprising layers of cations parallel to [001] that define rectangular channels parallel to [001] incorporating the anions and inter­nalized water mol­ecules. Not shown in Fig. 5 ▸, are indications of close Cl1⋯Cl1i contacts of 3.3510 (10) Å which occur within layers rather than between layers; symmetry operation (ii): 1 − x, y, − − z.
Figure 6

Detail of the hydrogen bonding operating in the crystal structure of (II). The charge-assisted amino-N—H⋯Cl− hydrogen bonds are shown as orange dashed lines and lead to zigzag chains along [001]. The charge-assisted imino-N+—H⋯O(water) hydrogen bonds are shown as blue dashed lines and both water-O—H⋯Cl− and water-O—H⋯O(water) hydrogen bonds are shown as brown dashed lines. For reasons of clarity, H atoms not involved in hydrogen bonding have been omitted.

Figure 7

Unit cell contents for (II) shown in projection down the c axis. The charge-assisted amino-N—H⋯Cl− (orange), imino-N+—H⋯Cl− (blue), water-O—H⋯Cl− (brown) and water-O—H⋯O(water) (brown) hydrogen bonds are shown as dashed lines.

Database survey

A search of the Cambridge Structural Database (Groom & Allen, 2014 ▸), revealed there are no direct analogues of (I) and (II) in the crystallographic literature. The structure of a closely related neutral species, i.e. 5-(di­methyl­amino)-3-(phenyl­imino)-1,2,4-di­thia­zole, characterized in its 1:1 co-crystal with 2-(di­methyl­carboxamido-imino)­benzo­thia­zole, (III) in the scheme below, has been reported (Flippen, 1977 ▸), along with several benzoyl derivatives, as exemplified by 3-(4-methyl-benzoyl­imino)-5-phenyl­amino-3H-1,2,4-di­thia­zole (IV) (Kleist et al., 1994 ▸). An evaluation of the bond lengths in the N—C—N—C—N sequences in these mol­ecules suggests a greater contribution of the canonical structure with formal C=N bonds, i.e. N—C=N—C=N. This difference is traced to the influence of the formal charge on the iminium-N atom.

Synthesis and crystallization

Synthesis of (I) To thio­urea (Merck, 5 mmol, 0.38 g) in aceto­nitrile (20 ml) was added 50% w/v NaOH (10 mmol, 0.40 ml) and phenyl iso­thio­cyanate (Merck, 10 mmol, 1.2 ml). The resulting mixture was stirred for 4 h at 323 K. 5 M HCl (20 mmol, 4.1 ml) was added and the mixture was stirred for another 1 h. The final product was extracted using chloro­form (200 ml). The powder that formed after 2 weeks was re-dissolved in dichoro­methane/aceto­nitrile (1:1 v/v, 200 ml), yielding yellow prisms after 3 weeks. Yield: 0.627 g (51%). M.p. 492–493 K. 1H NMR (400 MHz, DMSO-d 6, 298 K): 13.37 (s, br, 1H, NH), 10.73 (s, 1H, NH2), 10.66 (s, br, 1H, NH2), 7.74 (d, 2H, o-Ph-H, J = 7.96 Hz), 7.45 (dd, 2H, m-Ph-H, J = 7.82 Hz, J = 7.82 Hz), 7.27 (t, 1H, p-Ph-H, J = 7.34 Hz). 13C NMR (400 MHz, DMSO-d 6, 298 K): 182.9 [SC(=N)N], 176.1 [C(NH2)], 138.5 (C), 129.7 (C), 126.5 (C) 121.4 (C). IR (cm−1): 3414 (m) (N—H), ν 3007 (m) (C—H), ν 1248 (s) (C—N). Synthesis of (II) The p-chloro derivative (II) was prepared as described above but using 4-chloro­phenyl iso­thio­cyanate (Sigma–Aldrich) as the unique reagent. Yellow prismatic crystals were isolated after 4 weeks. Yield: 0.581 g (39%). M.p. 484–485 K. 1H NMR (400 MHz, DMSO-d 6, 298 K): 13.51 (s, br, 1H, NH), 10.72 (s, 1H, NH2), 10.41 (s, br, 1H, NH2), 7.77 (d, 2H, m-Ph-H, J = 8.60 Hz), 7.52 (d, 2H, o-Ph-H, J = 8.52 Hz), 3.48 (br, 2H, H2O). 13C NMR (400 MHz, DMSO-d 6, 298 K): 183.0 [SC(=N)N], 176.1 [CNH2], 137.4 (C), 130.3 (C), 129.6 (C), 122.9 (C). IR (cm−1): ν 2965 (br) (O—H), ν 1250 (s) (C—N).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. For (I) and (II), carbon-bound H atoms were placed in calculated positions (C—H = 0.95 Å) and were included in the refinement in the riding-model approximation, with U iso(H) set to 1.2U eq(C). The N-bound H-atoms were located in a difference Fourier map but were refined with a distance restraint of N—H = 0.88±0.01 Å, and with U iso(H) set to 1.2U eq(N). For (I), owing to poor agreement, one reflection, i.e. (020), was omitted from the final cycles of refinement. For (II), disorder was noted in the structure, involving the Cl2 anion and water mol­ecule of crystallization so that two proximate positions were resolved for the heteroatoms. The major component refined to a site occupancy factor of 0.9327 (18). The anisotropic displacement parameters for the pair of Cl2 anions and for the water-O atoms were constrained to be equal. Only the water-bound H atoms for the major component were resolved and these were assigned full weight with O—H 0.84±0.01 Å, and with U iso(H) = 1.5U eq(O).
Table 4

Experimental details

 (I)(II)
Crystal data
Chemical formulaC8H8N3S2 +·Cl C8H7ClN3S2 +·Cl·H2O
M r 245.74298.20
Crystal system, space groupOrthorhombic, P212121 Monoclinic, C2/c
Temperature (K)100100
a, b, c (Å)6.5702 (4), 10.8637 (7), 14.4964 (10)17.0581 (7), 14.1660 (7), 10.3215 (4)
α, β, γ (°)90, 90, 9090, 101.084 (4), 90
V3)1034.70 (12)2447.61 (19)
Z 48
Radiation typeMo KαMo Kα
μ (mm−1)0.730.85
Crystal size (mm)0.15 × 0.02 × 0.020.20 × 0.10 × 0.05
 
Data collection
DiffractometerBruker SMART APEX CCD diffractometerAgilent SuperNova Dual diffractometer with an Atlas detector
Absorption correctionMulti-scan (SADABS; Sheldrick, 1996)Multi-scan (CrysAlis PRO; Agilent, 2012)
T min, T max 0.898, 1.0000.748, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections9875, 2378, 218519709, 2821, 2142
R int 0.0440.064
(sin θ/λ)max−1)0.6500.650
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.028, 0.058, 1.070.046, 0.102, 1.02
No. of reflections23782821
No. of parameters136167
No. of restraints36
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.29, −0.210.76, −0.64
Absolute structureFlack x determined using 842 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013).
Absolute structure parameter0.08 (5)

Computer programs: CrysAlis PRO (Agilent, 2012 ▸), APEX2 and SAINT (Bruker, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), QMol (Gans & Shalloway, 2001 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, II, global. DOI: 10.1107/S2056989015016655/hb7500sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016655/hb7500Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989015016655/hb7500IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016655/hb7500Isup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016655/hb7500IIsup5.cml CCDC references: 1422604, 1422603 Additional supporting information: crystallographic information; 3D view; checkCIF report
C8H8N3S2+·ClDx = 1.578 Mg m3
Mr = 245.74Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 2635 reflections
a = 6.5702 (4) Åθ = 2.3–27.3°
b = 10.8637 (7) ŵ = 0.73 mm1
c = 14.4964 (10) ÅT = 100 K
V = 1034.70 (12) Å3Prism, yellow
Z = 40.15 × 0.02 × 0.02 mm
F(000) = 504
Bruker SMART APEX CCD diffractometer2378 independent reflections
Radiation source: fine-focus sealed tube2185 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.898, Tmax = 1.000k = −14→14
9875 measured reflectionsl = −18→18
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.028w = 1/[σ2(Fo2) + (0.0242P)2 + 0.0389P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.058(Δ/σ)max < 0.001
S = 1.07Δρmax = 0.29 e Å3
2378 reflectionsΔρmin = −0.21 e Å3
136 parametersAbsolute structure: Flack x determined using 842 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013).
3 restraintsAbsolute structure parameter: 0.08 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S11.07530 (11)0.36767 (6)0.26929 (5)0.01784 (16)
S20.85079 (11)0.48700 (7)0.22480 (5)0.01919 (17)
N11.0681 (4)0.2920 (2)0.44270 (15)0.0173 (5)
H1N1.027 (4)0.297 (3)0.4995 (11)0.021*
H2N1.182 (3)0.255 (3)0.4263 (19)0.021*
N20.8085 (3)0.4255 (2)0.40293 (14)0.0140 (5)
N30.5664 (4)0.5602 (2)0.33970 (16)0.0175 (5)
H3N0.540 (4)0.605 (2)0.2910 (14)0.021*
C10.9739 (4)0.3609 (2)0.38220 (17)0.0144 (6)
C20.7320 (4)0.4904 (3)0.33453 (18)0.0156 (6)
C30.4216 (4)0.5731 (2)0.41161 (18)0.0153 (6)
C40.4307 (4)0.5100 (2)0.49499 (18)0.0162 (6)
H40.54150.45670.50830.019*
C50.2751 (4)0.5264 (3)0.55831 (19)0.0173 (6)
H50.27800.48170.61460.021*
C60.1161 (4)0.6061 (3)0.54155 (19)0.0194 (6)
H60.01210.61730.58630.023*
C70.1093 (5)0.6702 (3)0.45801 (19)0.0202 (7)
H70.00060.72550.44580.024*
C80.2609 (4)0.6529 (3)0.39322 (19)0.0180 (6)
H80.25540.69560.33610.022*
Cl10.53467 (10)0.70982 (6)0.15949 (4)0.01812 (16)
U11U22U33U12U13U23
S10.0186 (4)0.0216 (3)0.0133 (3)0.0037 (3)0.0025 (3)0.0005 (3)
S20.0194 (4)0.0250 (4)0.0132 (3)0.0046 (3)0.0021 (3)0.0022 (3)
N10.0167 (13)0.0221 (12)0.0131 (11)0.0035 (12)0.0024 (10)0.0002 (10)
N20.0144 (13)0.0146 (12)0.0129 (11)−0.0016 (10)−0.0004 (9)−0.0006 (9)
N30.0181 (12)0.0194 (12)0.0151 (11)0.0040 (11)0.0019 (11)0.0045 (10)
C10.0150 (14)0.0150 (13)0.0133 (12)−0.0036 (12)0.0014 (11)−0.0008 (11)
C20.0167 (14)0.0161 (13)0.0138 (12)−0.0033 (12)0.0005 (12)−0.0019 (12)
C30.0134 (14)0.0152 (13)0.0172 (13)−0.0023 (12)0.0017 (12)−0.0031 (11)
C40.0155 (14)0.0155 (13)0.0175 (13)−0.0007 (13)−0.0012 (12)−0.0005 (10)
C50.0184 (15)0.0195 (14)0.0138 (13)−0.0044 (12)−0.0015 (11)−0.0005 (11)
C60.0152 (16)0.0220 (15)0.0210 (15)−0.0017 (12)0.0044 (12)−0.0035 (12)
C70.0166 (18)0.0188 (14)0.0252 (16)0.0036 (12)−0.0012 (12)−0.0039 (12)
C80.0203 (16)0.0162 (14)0.0176 (14)−0.0004 (12)−0.0022 (12)0.0003 (11)
Cl10.0179 (4)0.0221 (3)0.0144 (3)−0.0015 (3)−0.0009 (3)0.0030 (3)
S1—C11.769 (3)C3—C41.391 (4)
S1—S22.0669 (10)C3—C81.392 (4)
S2—C21.772 (3)C4—C51.386 (4)
N1—C11.309 (3)C4—H40.9500
N1—H1N0.869 (13)C5—C61.378 (4)
N1—H2N0.881 (13)C5—H50.9500
N2—C21.317 (3)C6—C71.398 (4)
N2—C11.328 (3)C6—H60.9500
N3—C21.328 (3)C7—C81.382 (4)
N3—C31.418 (3)C7—H70.9500
N3—H3N0.875 (12)C8—H80.9500
C1—S1—S292.63 (9)C8—C3—N3115.5 (2)
C2—S2—S192.72 (10)C5—C4—C3118.7 (3)
C1—N1—H1N117.0 (19)C5—C4—H4120.6
C1—N1—H2N119 (2)C3—C4—H4120.6
H1N—N1—H2N123 (3)C6—C5—C4121.6 (3)
C2—N2—C1115.1 (2)C6—C5—H5119.2
C2—N3—C3130.4 (2)C4—C5—H5119.2
C2—N3—H3N116 (2)C5—C6—C7119.3 (3)
C3—N3—H3N114 (2)C5—C6—H6120.3
N1—C1—N2122.5 (2)C7—C6—H6120.3
N1—C1—S1117.8 (2)C8—C7—C6119.9 (3)
N2—C1—S1119.7 (2)C8—C7—H7120.1
N2—C2—N3125.2 (2)C6—C7—H7120.1
N2—C2—S2119.8 (2)C7—C8—C3120.1 (3)
N3—C2—S2115.1 (2)C7—C8—H8120.0
C4—C3—C8120.4 (3)C3—C8—H8120.0
C4—C3—N3124.1 (2)
C2—N2—C1—N1179.8 (3)C2—N3—C3—C40.2 (4)
C2—N2—C1—S10.4 (3)C2—N3—C3—C8−178.3 (3)
S2—S1—C1—N1−179.9 (2)C8—C3—C4—C51.2 (4)
S2—S1—C1—N2−0.5 (2)N3—C3—C4—C5−177.2 (2)
C1—N2—C2—N3179.2 (2)C3—C4—C5—C6−1.9 (4)
C1—N2—C2—S2−0.1 (3)C4—C5—C6—C71.2 (4)
C3—N3—C2—N2−7.6 (5)C5—C6—C7—C80.2 (4)
C3—N3—C2—S2171.6 (2)C6—C7—C8—C3−0.9 (4)
S1—S2—C2—N2−0.2 (2)C4—C3—C8—C70.2 (4)
S1—S2—C2—N3−179.5 (2)N3—C3—C8—C7178.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl1i0.87 (2)2.36 (2)3.215 (2)170 (3)
N1—H2N···Cl1ii0.88 (2)2.29 (2)3.131 (3)159 (3)
N3—H3N···Cl10.88 (2)2.22 (2)3.084 (2)169 (2)
C8H7ClN3S2+·Cl·H2OF(000) = 1216
Mr = 298.20Dx = 1.618 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 17.0581 (7) ÅCell parameters from 4628 reflections
b = 14.1660 (7) Åθ = 2.4–27.5°
c = 10.3215 (4) ŵ = 0.85 mm1
β = 101.084 (4)°T = 100 K
V = 2447.61 (19) Å3Prism, yellow
Z = 80.20 × 0.10 × 0.05 mm
Agilent SuperNova Dual diffractometer with an Atlas detector2821 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2142 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.064
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.4°
ω scanh = −22→22
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −18→18
Tmin = 0.748, Tmax = 1.000l = −13→13
19709 measured reflections
Refinement on F26 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0237P)2 + 10.8824P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
2821 reflectionsΔρmax = 0.76 e Å3
167 parametersΔρmin = −0.64 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Cl10.55093 (5)0.90087 (7)−0.09408 (7)0.0413 (2)
Cl20.79427 (5)0.93836 (6)1.03317 (7)0.0315 (2)0.9327 (18)
Cl2'0.8457 (8)0.9762 (9)1.0388 (10)0.0315 (2)0.0673 (18)
S10.70602 (5)0.75085 (6)0.81299 (7)0.02725 (19)
S20.65448 (5)0.65361 (6)0.67312 (7)0.0304 (2)
N10.73581 (17)0.9221 (2)0.7316 (2)0.0307 (6)
H1N0.740 (2)0.9640 (19)0.671 (3)0.037*
H2N0.7550 (19)0.932 (3)0.8156 (13)0.037*
N20.67993 (14)0.81976 (17)0.5669 (2)0.0216 (5)
N30.61963 (15)0.70381 (19)0.4213 (2)0.0253 (6)
H3N0.5993 (18)0.6468 (11)0.415 (3)0.030*
C10.70728 (17)0.8388 (2)0.6944 (3)0.0234 (6)
C20.65147 (16)0.7342 (2)0.5421 (3)0.0222 (6)
C30.60695 (16)0.7557 (2)0.3010 (3)0.0208 (6)
C40.60976 (17)0.8531 (2)0.2941 (3)0.0246 (6)
H40.62300.88950.37260.029*
C50.59310 (17)0.8977 (2)0.1718 (3)0.0258 (6)
H50.59500.96450.16620.031*
C60.57366 (16)0.8435 (2)0.0582 (3)0.0252 (7)
C70.57171 (17)0.7464 (2)0.0638 (3)0.0277 (7)
H70.55930.7103−0.01500.033*
C80.58805 (17)0.7020 (2)0.1854 (3)0.0258 (6)
H80.58640.63510.19040.031*
O1W0.54036 (18)0.5195 (2)0.3920 (3)0.0455 (7)0.9327 (18)
H1O0.5860 (11)0.495 (3)0.419 (4)0.068*
H2O0.5075 (16)0.493 (3)0.430 (4)0.068*
O1W'0.503 (2)0.485 (3)0.336 (4)0.0455 (7)0.0673 (18)
U11U22U33U12U13U23
Cl10.0453 (5)0.0588 (6)0.0198 (4)0.0229 (4)0.0062 (3)0.0110 (4)
Cl20.0394 (5)0.0378 (5)0.0172 (4)0.0038 (4)0.0051 (3)0.0024 (3)
Cl2'0.0394 (5)0.0378 (5)0.0172 (4)0.0038 (4)0.0051 (3)0.0024 (3)
S10.0329 (4)0.0323 (4)0.0169 (4)0.0045 (3)0.0056 (3)0.0028 (3)
S20.0432 (5)0.0290 (4)0.0193 (4)−0.0042 (4)0.0068 (3)0.0052 (3)
N10.0455 (17)0.0270 (15)0.0170 (12)−0.0015 (13)−0.0003 (12)−0.0009 (11)
N20.0220 (12)0.0239 (13)0.0183 (12)0.0001 (10)0.0027 (9)0.0019 (10)
N30.0288 (14)0.0279 (14)0.0191 (12)−0.0079 (11)0.0040 (10)0.0012 (10)
C10.0233 (15)0.0290 (16)0.0183 (13)0.0042 (13)0.0052 (11)0.0025 (12)
C20.0201 (14)0.0293 (17)0.0184 (14)0.0012 (12)0.0070 (11)0.0037 (12)
C30.0175 (13)0.0280 (16)0.0174 (13)−0.0047 (12)0.0045 (10)0.0013 (11)
C40.0228 (15)0.0331 (17)0.0173 (14)0.0008 (13)0.0025 (11)−0.0013 (12)
C50.0221 (15)0.0301 (17)0.0246 (15)0.0049 (13)0.0032 (12)0.0049 (13)
C60.0167 (14)0.0415 (19)0.0171 (13)0.0066 (13)0.0025 (11)0.0053 (13)
C70.0215 (15)0.0423 (19)0.0191 (14)−0.0025 (14)0.0034 (11)−0.0055 (13)
C80.0241 (15)0.0293 (17)0.0240 (15)−0.0074 (13)0.0044 (12)−0.0012 (12)
O1W0.0394 (17)0.0353 (17)0.066 (2)0.0025 (13)0.0211 (15)0.0151 (14)
O1W'0.0394 (17)0.0353 (17)0.066 (2)0.0025 (13)0.0211 (15)0.0151 (14)
Cl1—C61.746 (3)C3—C81.399 (4)
S1—C11.749 (3)C4—C51.390 (4)
S1—S22.0657 (11)C4—H40.9500
S2—C21.763 (3)C5—C61.387 (4)
N1—C11.306 (4)C5—H50.9500
N1—H1N0.876 (10)C6—C71.377 (5)
N1—H2N0.876 (10)C7—C81.384 (4)
N2—C21.312 (4)C7—H70.9500
N2—C11.337 (4)C8—H80.9500
N3—C21.332 (4)O1W—H1O0.850 (10)
N3—C31.423 (4)O1W—H2O0.835 (10)
N3—H3N0.876 (10)O1W'—O1W'i1.75 (9)
C3—C41.384 (4)
C1—S1—S292.68 (11)C8—C3—N3115.8 (3)
C2—S2—S192.84 (11)C3—C4—C5119.8 (3)
C1—N1—H1N119 (2)C3—C4—H4120.1
C1—N1—H2N119 (2)C5—C4—H4120.1
H1N—N1—H2N122 (3)C6—C5—C4119.4 (3)
C2—N2—C1115.1 (2)C6—C5—H5120.3
C2—N3—C3128.0 (3)C4—C5—H5120.3
C2—N3—H3N117 (2)C7—C6—C5121.4 (3)
C3—N3—H3N115 (2)C7—C6—Cl1120.0 (2)
N1—C1—N2120.7 (3)C5—C6—Cl1118.7 (3)
N1—C1—S1119.5 (2)C6—C7—C8119.4 (3)
N2—C1—S1119.8 (2)C6—C7—H7120.3
N2—C2—N3123.4 (3)C8—C7—H7120.3
N2—C2—S2119.6 (2)C7—C8—C3119.9 (3)
N3—C2—S2117.0 (2)C7—C8—H8120.0
C4—C3—C8120.2 (3)C3—C8—H8120.0
C4—C3—N3124.0 (3)H1O—O1W—H2O108.5 (17)
C2—N2—C1—N1−178.8 (3)C2—N3—C3—C8167.1 (3)
C2—N2—C1—S11.9 (4)C8—C3—C4—C50.5 (4)
S2—S1—C1—N1179.7 (2)N3—C3—C4—C5−177.2 (3)
S2—S1—C1—N2−1.0 (2)C3—C4—C5—C60.1 (4)
C1—N2—C2—N3178.0 (3)C4—C5—C6—C7−1.0 (4)
C1—N2—C2—S2−1.9 (3)C4—C5—C6—Cl1178.7 (2)
C3—N3—C2—N2−3.0 (5)C5—C6—C7—C81.2 (4)
C3—N3—C2—S2176.9 (2)Cl1—C6—C7—C8−178.5 (2)
S1—S2—C2—N21.1 (2)C6—C7—C8—C3−0.5 (4)
S1—S2—C2—N3−178.9 (2)C4—C3—C8—C7−0.3 (4)
C2—N3—C3—C4−15.1 (5)N3—C3—C8—C7177.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl2ii0.88 (3)2.30 (3)3.144 (3)161 (3)
N1—H2N···Cl20.88 (2)2.22 (1)3.089 (2)172 (4)
N3—H3N···O1W0.88 (2)2.06 (2)2.927 (4)174 (3)
O1W—H2O···O1Wiii0.84 (3)2.29 (4)2.884 (4)128 (3)
O1W—H1O···Cl2iv0.85 (3)2.16 (3)3.005 (3)170 (3)
  8 in total

1.  Qmol: a program for molecular visualization on Windows-based PCs.

Authors:  J D Gans; D Shalloway
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

4.  Phosphanegold(I) thiolates, Ph3PAu[SC(OR)=NC 6H 4Me-4] for R = Me, Et and iPr, induce apoptosis, cell cycle arrest and inhibit cell invasion of HT-29 colon cancer cells through modulation of the nuclear factor-κB activation pathway and ubiquitination.

Authors:  Kah Kooi Ooi; Chien Ing Yeo; Kok-Pian Ang; Abdah Md Akim; Yoke-Kqueen Cheah; Siti Nadiah Abdul Halim; Hoi-Ling Seng; Edward R T Tiekink
Journal:  J Biol Inorg Chem       Date:  2015-05-24       Impact factor: 3.358

5.  Luminescent phosphine gold(I) thiolates: correlation between crystal structure and photoluminescent properties in [R3PAu{SC(OMe)=NC6H4NO2-4}] (R = Et, Cy, Ph) and [(Ph2P-R-PPh2){AuSC(OMe)=NC6H4NO2-4}2] (R = CH2, (CH2)2, (CH2)3, (CH2)4, Fc).

Authors:  Soo Yei Ho; Eddie Chung-Chin Cheng; Edward R T Tiekink; Vivian Wing-Wah Yam
Journal:  Inorg Chem       Date:  2006-10-02       Impact factor: 5.165

6.  The influence of R substituents in triphenylphosphinegold(I) carbonimidothioates, Ph3PAu[SC(OR)=NPh] (R=Me, Et and iPr), upon in vitro cytotoxicity against the HT-29 colon cancer cell line and upon apoptotic pathways.

Authors:  Chien Ing Yeo; Kah Kooi Ooi; Abdah Md Akim; Kok Pian Ang; Zainal Abidin Fairuz; Siti Nadiah Binti Abdul Halim; Seik Weng Ng; Hoi-Ling Seng; Edward R T Tiekink
Journal:  J Inorg Biochem       Date:  2013-05-28       Impact factor: 4.155

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17
  8 in total

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