Literature DB >> 26594087

Stochastic diffusion processes on Cartesian meshes.

Lina Meinecke1, Per Lötstedt1.   

Abstract

Diffusion of molecules is simulated stochastically by letting them jump between voxels in a Cartesian mesh. The jump coefficients are first derived using finite difference, finite element, and finite volume approximations of the Laplacian on the mesh. An alternative is to let the first exit time for a molecule in random walk in a voxel define the jump coefficient. Such coefficients have the advantage of always being non-negative. These four different ways of obtaining the diffusion propensities are compared theoretically and in numerical experiments. A finite difference and a finite volume approximation generate the most accurate coefficients.

Entities:  

Keywords:  65C05; 65C35; 92C05; Cartesian mesh; diffusion; stochastic simulation

Year:  2015        PMID: 26594087      PMCID: PMC4651464          DOI: 10.1016/j.cam.2015.07.035

Source DB:  PubMed          Journal:  J Comput Appl Math        ISSN: 0377-0427            Impact factor:   2.621


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