Literature DB >> 26587619

Benchmarking of London Dispersion-Accounting Density Functional Theory Methods on Very Large Molecular Complexes.

Tobias Risthaus1,2, Stefan Grimme1.   

Abstract

A new test set (S12L) containing 12 supramolecular noncovalently bound complexes is presented and used to evaluate seven different methods to account for dispersion in DFT (DFT-D3, DFT-D2, DFT-NL, XDM, dDsC, TS-vdW, M06-L) at different basis set levels against experimental, back-corrected reference energies. This allows conclusions about the performance of each method in an explorative research setting on "real-life" problems. Most DFT methods show satisfactory performance but, due to the largeness of the complexes, almost always require an explicit correction for the nonadditive Axilrod-Teller-Muto three-body dispersion interaction to get accurate results. The necessity of using a method capable of accounting for dispersion is clearly demonstrated in that the two-body dispersion contributions are on the order of 20-150% of the total interaction energy. MP2 and some variants thereof are shown to be insufficient for this while a few tested D3-corrected semiempirical MO methods perform reasonably well. Overall, we suggest the use of this benchmark set as a "sanity check" against overfitting to too small molecular cases.

Entities:  

Year:  2013        PMID: 26587619     DOI: 10.1021/ct301081n

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  41 in total

1.  A priori calculations of the free energy of formation from solution of polymorphic self-assembled monolayers.

Authors:  Jeffrey R Reimers; Dwi Panduwinata; Johan Visser; Yiing Chin; Chunguang Tang; Lars Goerigk; Michael J Ford; Maxine Sintic; Tze-Jing Sum; Michiel J J Coenen; Bas L M Hendriksen; Johannes A A W Elemans; Noel S Hush; Maxwell J Crossley
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-28       Impact factor: 11.205

2.  Density functional tight binding: values of semi-empirical methods in an ab initio era.

Authors:  Qiang Cui; Marcus Elstner
Journal:  Phys Chem Chem Phys       Date:  2014-07-28       Impact factor: 3.676

Review 3.  Molecular modeling of nucleic acid structure: energy and sampling.

Authors:  T E Cheatham; B R Brooks; P A Kollman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-05

4.  Calculating distribution coefficients based on multi-scale free energy simulations: an evaluation of MM and QM/MM explicit solvent simulations of water-cyclohexane transfer in the SAMPL5 challenge.

Authors:  Gerhard König; Frank C Pickard; Jing Huang; Andrew C Simmonett; Florentina Tofoleanu; Juyong Lee; Pavlo O Dral; Samarjeet Prasad; Michael Jones; Yihan Shao; Walter Thiel; Bernard R Brooks
Journal:  J Comput Aided Mol Des       Date:  2016-08-30       Impact factor: 3.686

5.  The accuracy of quantum chemical methods for large noncovalent complexes.

Authors:  Robert Sedlak; Tomasz Janowski; Michal Pitoňák; Jan Rezáč; Peter Pulay; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006

6.  First detection of doubly deuterated methyl acetylene (CHD2CCH and CH2DCCD).

Authors:  M Agúndez; E Roueff; C Cabezas; J Cernicharo; N Marcelino
Journal:  Astron Astrophys       Date:  2021-06-01       Impact factor: 5.802

7.  Amino acid adsorption on anatase (101) surface at vacuum and aqueous solution: a density functional study.

Authors:  Liuxie Liu; Kai Li; Xiao Chen; Xiaoqin Liang; Yan Zheng; Laicai Li
Journal:  J Mol Model       Date:  2018-03-29       Impact factor: 1.810

8.  Rotational spectra of van der Waals complexes: pyrrole-Ne and pyrrole-Ne2.

Authors:  Isabel Peña; Carlos Cabezas
Journal:  Phys Chem Chem Phys       Date:  2020-11-18       Impact factor: 3.676

9.  Nature of noncovalent interactions in catenane supramolecular complexes: calibrating the MM3 force field with ab initio, DFT, and SAPT methods.

Authors:  Tomekia M Simeon; Mark A Ratner; George C Schatz
Journal:  J Phys Chem A       Date:  2013-08-13       Impact factor: 2.781

10.  Unraveling the performance of dispersion-corrected functionals for the accurate description of weakly bound natural polyphenols.

Authors:  Florent Di Meo; Imene Bayach; Patrick Trouillas; Juan-Carlos Sancho-García
Journal:  J Mol Model       Date:  2015-10-26       Impact factor: 1.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.