Literature DB >> 26587615

Characterization of the Elusive Conformers of Glycine from State-of-the-Art Structural, Thermodynamic, and Spectroscopic Computations: Theory Complements Experiment.

Vincenzo Barone1, Malgorzata Biczysko2, Julien Bloino1,3, Cristina Puzzarini4.   

Abstract

A state-of-the-art computational strategy for the evaluation of accurate molecular structures as well as thermodynamic and spectroscopic properties along with the direct simulation of infrared (IR) and Raman spectra is established, validated (on the basis of the experimental data available for the Ip glycine conformer) and then used to provide a reliable and accurate characterization of the elusive IVn/gtt and IIIp/tct glycine conformers. The integrated theoretical model proposed is based on accurate post-Hartree-Fock computations (involving composite schemes) of energies, structures, properties, and harmonic force fields coupled to DFT corrections for the proper inclusion of vibrational effects at an anharmonic level (as provided by general second-order perturbative approach). It is shown that the approach presented here allows the evaluation of structural, thermodynamic, and spectroscopic properties with an overall accuracy of about, or better than, 0.001 Å, 20 MHz, 1 kJ·mol(-1), and 10 cm(-1) for bond distances, rotational constants, conformational enthalpies, and vibrational frequencies, respectively. The high accuracy of the computational results allows one to support and complement experimental studies, thus providing (i) an unequivocal identification of several conformers concomitantly present in the experimental mixture and (ii) data not available or difficult to experimentally derive.

Entities:  

Year:  2013        PMID: 26587615     DOI: 10.1021/ct3010672

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  19 in total

1.  Anharmonic theoretical simulations of infrared spectra of halogenated organic compounds.

Authors:  Ivan Carnimeo; Cristina Puzzarini; Nicola Tasinato; Paolo Stoppa; Andrea Pietropolli Charmet; Malgorzata Biczysko; Chiara Cappelli; Vincenzo Barone
Journal:  J Chem Phys       Date:  2013-08-21       Impact factor: 3.488

2.  Alkaline and Alkaline-earth Cyanoacetylides: A Combined Theoretical and Rotational Spectroscopic Investigation.

Authors:  Carlos Cabezas; Carmen Barrientos; Antonio Largo; Jean-Claude Guillemin; José Cernicharo; José L Alonso
Journal:  J Chem Phys       Date:  2019-08-07       Impact factor: 3.488

3.  CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Paola Cimino; Emanuele Penocchio; Cristina Puzzarini
Journal:  J Chem Theory Comput       Date:  2015-08-07       Impact factor: 6.006

4.  Identification of Serine Conformers by Matrix-Isolation IR Spectroscopy Aided by Near-Infrared Laser-Induced Conformational Change, 2D Correlation Analysis, and Quantum Mechanical Anharmonic Computations.

Authors:  Eszter E Najbauer; Gábor Bazsó; Rui Apóstolo; Rui Fausto; Malgorzata Biczysko; Vincenzo Barone; György Tarczay
Journal:  J Phys Chem B       Date:  2015-08-05       Impact factor: 2.991

5.  Structural features of the carbon-sulfur chemical bond: a semi-experimental perspective.

Authors:  Emanuele Penocchio; Marco Mendolicchio; Nicola Tasinato; Vincenzo Barone
Journal:  Can J Chem       Date:  2016-07-28       Impact factor: 1.118

6.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

7.  Anharmonic Effects on Vibrational Spectra Intensities: Infrared, Raman, Vibrational Circular Dichroism, and Raman Optical Activity.

Authors:  Julien Bloino; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Phys Chem A       Date:  2015-12-01       Impact factor: 2.781

8.  ACCURATE SPECTROSCOPIC CHARACTERIZATION OF PROTONATED OXIRANE: A POTENTIAL PREBIOTIC SPECIES IN TITAN'S ATMOSPHERE.

Authors:  Cristina Puzzarini; Ashraf Ali; Malgorzata Biczysko; Vincenzo Barone
Journal:  Astrophys J       Date:  2014-09-10       Impact factor: 5.874

9.  ACCURATE SPECTROSCOPIC CHARACTERIZATION OF OXIRANE: A VALUABLE ROUTE TO ITS IDENTIFICATION IN TITAN'S ATMOSPHERE AND THE ASSIGNMENT OF UNIDENTIFIED INFRARED BANDS.

Authors:  Cristina Puzzarini; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Astrophys J       Date:  2014-04-20       Impact factor: 5.874

10.  Generation and structural characterization of aluminum cyanoacetylide.

Authors:  Carlos Cabezas; Carmen Barrientos; Antonio Largo; Jean-Claude Guillemin; José Cernicharo; Isabel Peña; José L Alonso
Journal:  J Chem Phys       Date:  2014-09-14       Impact factor: 3.488

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