Literature DB >> 26581546

The clinical impact of recent advances in LC-MS for cancer biomarker discovery and verification.

Hui Wang1, Tujin Shi1, Wei-Jun Qian1, Tao Liu1, Jacob Kagan2, Sudhir Srivastava2, Richard D Smith1, Karin D Rodland1, David G Camp1.   

Abstract

Mass spectrometry (MS) -based proteomics has become an indispensable tool with broad applications in systems biology and biomedical research. With recent advances in liquid chromatography (LC) and MS instrumentation, LC-MS is making increasingly significant contributions to clinical applications, especially in the area of cancer biomarker discovery and verification. To overcome challenges associated with analyses of clinical samples (for example, a wide dynamic range of protein concentrations in bodily fluids and the need to perform high throughput and accurate quantification of candidate biomarker proteins), significant efforts have been devoted to improve the overall performance of LC-MS-based clinical proteomics platforms. Reviewed here are the recent advances in LC-MS and its applications in cancer biomarker discovery and quantification, along with the potentials, limitations and future perspectives.

Entities:  

Keywords:  LC–MS; PRISM; cancer biomarker; isobaric labelling; label-free; multiple reaction monitoring; proteomics; selected reaction monitoring; targeted quantification

Mesh:

Substances:

Year:  2015        PMID: 26581546      PMCID: PMC4822694          DOI: 10.1586/14789450.2016.1122529

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  148 in total

Review 1.  Phases of biomarker development for early detection of cancer.

Authors:  M S Pepe; R Etzioni; Z Feng; J D Potter; M L Thompson; M Thornquist; M Winget; Y Yasui
Journal:  J Natl Cancer Inst       Date:  2001-07-18       Impact factor: 13.506

Review 2.  Proteomics for cancer biomarker discovery.

Authors:  Pothur R Srinivas; Mukesh Verma; Yinming Zhao; Sudhir Srivastava
Journal:  Clin Chem       Date:  2002-08       Impact factor: 8.327

3.  Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.

Authors:  Eric Kuhn; Jeffrey R Whiteaker; D R Mani; Angela M Jackson; Lei Zhao; Matthew E Pope; Derek Smith; Keith D Rivera; N Leigh Anderson; Steven J Skates; Terry W Pearson; Amanda G Paulovich; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2011-12-22       Impact factor: 5.911

4.  Options and considerations when selecting a quantitative proteomics strategy.

Authors:  Bruno Domon; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2010-07-09       Impact factor: 54.908

5.  Perspective: a program to improve protein biomarker discovery for cancer.

Authors:  Ruedi Aebersold; Leigh Anderson; Richard Caprioli; Brian Druker; Leland Hartwell; Richard Smith
Journal:  J Proteome Res       Date:  2005 Jul-Aug       Impact factor: 4.466

Review 6.  A perspective on the use of iTRAQ reagent technology for protein complex and profiling studies.

Authors:  Lynn R Zieske
Journal:  J Exp Bot       Date:  2006-03-30       Impact factor: 6.992

7.  Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research.

Authors:  Sebastian Wiese; Kai A Reidegeld; Helmut E Meyer; Bettina Warscheid
Journal:  Proteomics       Date:  2007-02       Impact factor: 3.984

8.  Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum.

Authors:  Tujin Shi; Thomas L Fillmore; Xuefei Sun; Rui Zhao; Athena A Schepmoes; Mahmud Hossain; Fang Xie; Si Wu; Jong-Seo Kim; Nathan Jones; Ronald J Moore; Ljiljana Pasa-Tolić; Jacob Kagan; Karin D Rodland; Tao Liu; Keqi Tang; David G Camp; Richard D Smith; Wei-Jun Qian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

9.  Amyloid-beta and tau synergistically impair the oxidative phosphorylation system in triple transgenic Alzheimer's disease mice.

Authors:  Virginie Rhein; Xiaomin Song; Andreas Wiesner; Lars M Ittner; Ginette Baysang; Fides Meier; Laurence Ozmen; Horst Bluethmann; Stefan Dröse; Ulrich Brandt; Egemen Savaskan; Christian Czech; Jürgen Götz; Anne Eckert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-06       Impact factor: 11.205

10.  Quantitative proteomic analysis reveals potential diagnostic markers and pathways involved in pathogenesis of renal cell carcinoma.

Authors:  Nicole M A White; Olena Masui; Leroi V Desouza; Olga Krakovska; Shereen Metias; Alexander D Romaschin; R John Honey; Robert Stewart; Kenneth Pace; Jason Lee; Michael As Jewett; Georg A Bjarnason; K W Michael Siu; George M Yousef
Journal:  Oncotarget       Date:  2014-01-30
View more
  14 in total

1.  High-throughput Proteomic Profiling of Male Breast Cancer Tissue.

Authors:  Eleni Zografos; Stavros C Proikakis; Athanasios K Anagnostopoulos; Anna-Maria Korakiti; Flora Zagouri; Maria Gazouli; George T Tsangaris
Journal:  Cancer Genomics Proteomics       Date:  2022 Mar-Apr       Impact factor: 4.069

2.  A novel graphene oxide/chitosan foam incorporated with metal-organic framework stationary phase for simultaneous enrichment of glycopeptide and phosphopeptide with high efficiency.

Authors:  Rong Liu; Wenqing Gao; Jiaqian Yang; Shun Zhang; Chenlu Wang; Jing Lin; Sijia Zhang; Jiancheng Yu; Keqi Tang
Journal:  Anal Bioanal Chem       Date:  2022-01-06       Impact factor: 4.142

3.  ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies.

Authors:  Jing Tang; Jianbo Fu; Yunxia Wang; Bo Li; Yinghong Li; Qingxia Yang; Xuejiao Cui; Jiajun Hong; Xiaofeng Li; Yuzong Chen; Weiwei Xue; Feng Zhu
Journal:  Brief Bioinform       Date:  2020-03-23       Impact factor: 11.622

4.  Utilizing Ion Mobility to Identify Isobaric Post-Translational Modifications: Resolving Acrolein and Propionyl Lysine Adducts by TIMS Mass Spectrometry.

Authors:  Jose D Gomez; Mark E Ridgeway; Melvin A Park; Kristofer S Fritz
Journal:  Int J Ion Mobil Spectrom       Date:  2018-08-09

5.  Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics.

Authors:  Hui Wang; Christopher E Barbieri; Jintang He; Yuqian Gao; Tujin Shi; Chaochao Wu; Athena A Schepmoes; Thomas L Fillmore; Sung-Suk Chae; Dennis Huang; Juan Miguel Mosquera; Wei-Jun Qian; Richard D Smith; Sudhir Srivastava; Jacob Kagan; David G Camp; Karin D Rodland; Mark A Rubin; Tao Liu
Journal:  J Transl Med       Date:  2017-08-15       Impact factor: 5.531

6.  Translation and evaluation of a pre-clinical 5-protein response prediction signature in a breast cancer phase Ib clinical trial.

Authors:  Axel Ducret; Ian James; Sabine Wilson; Martina Feilke; Andreas Tebbe; Nikolaj Dybowski; Sarah Elschenbroich; Martin Klammer; Adele Blackler; Wei-Li Liao; Yuan Tian; Thomas Friess; Birgit Bossenmaier; Gabriele Dietmann; Christoph Schaab; Todd Hembrough; Maurizio Ceppi
Journal:  PLoS One       Date:  2019-03-21       Impact factor: 3.240

Review 7.  MS1 ion current-based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts.

Authors:  Xue Wang; Shichen Shen; Sailee Suryakant Rasam; Jun Qu
Journal:  Mass Spectrom Rev       Date:  2019-03-28       Impact factor: 10.946

8.  Genetic Mutation Analysis in Small Cell Lung Cancer by a Novel NGS-Based Targeted Resequencing Gene Panel and Relation with Clinical Features.

Authors:  Wang Jin; Zhao Lei; Sun Xu; Zhou Fachen; Zhang Yixiang; Zhao Shilei; Guo Tao; Sun Zhe; Li Fengzhou; Wen-Hui Su; Gu Chundong
Journal:  Biomed Res Int       Date:  2021-04-05       Impact factor: 3.411

9.  Detection and localization of surgically resectable cancers with a multi-analyte blood test.

Authors:  Joshua D Cohen; Lu Li; Yuxuan Wang; Christopher Thoburn; Bahman Afsari; Ludmila Danilova; Christopher Douville; Ammar A Javed; Fay Wong; Austin Mattox; Ralph H Hruban; Christopher L Wolfgang; Michael G Goggins; Marco Dal Molin; Tian-Li Wang; Richard Roden; Alison P Klein; Janine Ptak; Lisa Dobbyn; Joy Schaefer; Natalie Silliman; Maria Popoli; Joshua T Vogelstein; James D Browne; Robert E Schoen; Randall E Brand; Jeanne Tie; Peter Gibbs; Hui-Li Wong; Aaron S Mansfield; Jin Jen; Samir M Hanash; Massimo Falconi; Peter J Allen; Shibin Zhou; Chetan Bettegowda; Luis A Diaz; Cristian Tomasetti; Kenneth W Kinzler; Bert Vogelstein; Anne Marie Lennon; Nickolas Papadopoulos
Journal:  Science       Date:  2018-01-18       Impact factor: 47.728

Review 10.  Challenges and Opportunities in Clinical Applications of Blood-Based Proteomics in Cancer.

Authors:  Ruchika Bhawal; Ann L Oberg; Sheng Zhang; Manish Kohli
Journal:  Cancers (Basel)       Date:  2020-08-27       Impact factor: 6.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.