Literature DB >> 26575238

Imaging and manipulating proteins in live cells through covalent labeling.

Lin Xue1, Iuliia A Karpenko1, Julien Hiblot1, Kai Johnsson1.   

Abstract

The past 20 years have witnessed the advent of numerous technologies to specifically and covalently label proteins in cellulo and in vivo with synthetic probes. These technologies range from self-labeling proteins tags to non-natural amino acids, and the question is no longer how we can specifically label a given protein but rather with what additional functionality we wish to equip it. In addition, progress in fields such as super-resolution microscopy and genome editing have either provided additional motivation to label proteins with advanced synthetic probes or removed some of the difficulties of conducting such experiments. By focusing on two particular applications, live-cell imaging and the generation of reversible protein switches, we outline the opportunities and challenges of the field and how the synergy between synthetic chemistry and protein engineering will make it possible to conduct experiments that are not feasible with conventional approaches.

Mesh:

Substances:

Year:  2015        PMID: 26575238     DOI: 10.1038/nchembio.1959

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  73 in total

1.  Mechanisms of photoswitch conjugation and light activation of an ionotropic glutamate receptor.

Authors:  Pau Gorostiza; Matthew Volgraf; Rika Numano; Stephanie Szobota; Dirk Trauner; Ehud Y Isacoff
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-19       Impact factor: 11.205

Review 2.  Near-infrared fluorescence: application to in vivo molecular imaging.

Authors:  Scott A Hilderbrand; Ralph Weissleder
Journal:  Curr Opin Chem Biol       Date:  2009-10-30       Impact factor: 8.822

Review 3.  Ultra-stable organic fluorophores for single-molecule research.

Authors:  Qinsi Zheng; Manuel F Juette; Steffen Jockusch; Michael R Wasserman; Zhou Zhou; Roger B Altman; Scott C Blanchard
Journal:  Chem Soc Rev       Date:  2014-02-21       Impact factor: 54.564

4.  LDAI-based chemical labeling of intact membrane proteins and its pulse-chase analysis under live cell conditions.

Authors:  Takayuki Miki; Sho-hei Fujishima; Kazuhiro Komatsu; Keiko Kuwata; Shigeki Kiyonaka; Itaru Hamachi
Journal:  Chem Biol       Date:  2014-08-14

5.  LiGluR restores visual responses in rodent models of inherited blindness.

Authors:  Natalia Caporale; Kathleen D Kolstad; Trevor Lee; Ivan Tochitsky; Deniz Dalkara; Dirk Trauner; Richard Kramer; Yang Dan; Ehud Y Isacoff; John G Flannery
Journal:  Mol Ther       Date:  2011-05-24       Impact factor: 11.454

6.  A fluorescent sensor for GABA and synthetic GABA(B) receptor ligands.

Authors:  Anastasiya Masharina; Luc Reymond; Damien Maurel; Keitaro Umezawa; Kai Johnsson
Journal:  J Am Chem Soc       Date:  2012-11-05       Impact factor: 15.419

7.  Genetic Encoding of bicyclononynes and trans-cyclooctenes for site-specific protein labeling in vitro and in live mammalian cells via rapid fluorogenic Diels-Alder reactions.

Authors:  Kathrin Lang; Lloyd Davis; Stephen Wallace; Mohan Mahesh; Daniel J Cox; Melissa L Blackman; Joseph M Fox; Jason W Chin
Journal:  J Am Chem Soc       Date:  2012-06-13       Impact factor: 15.419

8.  Expanding the genetic code of an animal.

Authors:  Sebastian Greiss; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-08-22       Impact factor: 15.419

9.  Genetic code expansion enables live-cell and super-resolution imaging of site-specifically labeled cellular proteins.

Authors:  Chayasith Uttamapinant; Jonathan D Howe; Kathrin Lang; Václav Beránek; Lloyd Davis; Mohan Mahesh; Nicholas P Barry; Jason W Chin
Journal:  J Am Chem Soc       Date:  2015-04-01       Impact factor: 15.419

10.  Protein delivery into live cells by incubation with an endosomolytic agent.

Authors:  Alfredo Erazo-Oliveras; Kristina Najjar; Laila Dayani; Ting-Yi Wang; Gregory A Johnson; Jean-Philippe Pellois
Journal:  Nat Methods       Date:  2014-06-15       Impact factor: 28.547

View more
  55 in total

1.  Photostable and Orthogonal Solvatochromic Fluorophores for Simultaneous In Situ Quantification of Multiple Cellular Signaling Molecules.

Authors:  Ashutosh Sharma; Jiachen Sun; Indira Singaram; Arthur Ralko; Daesung Lee; Wonhwa Cho
Journal:  ACS Chem Biol       Date:  2020-06-25       Impact factor: 5.100

Review 2.  Arylation Chemistry for Bioconjugation.

Authors:  Chi Zhang; Ekaterina V Vinogradova; Alexander M Spokoyny; Stephen L Buchwald; Bradley L Pentelute
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-15       Impact factor: 15.336

3.  Modular Synthesis of Novel Macrocycles Bearing α,β-Unsaturated Chemotypes through a Series of One-Pot, Sequential Protocols.

Authors:  Salim Javed; Mahipal Bodugam; Jessica Torres; Arghya Ganguly; Paul R Hanson
Journal:  Chemistry       Date:  2016-04-05       Impact factor: 5.236

4.  Quaternization of Vinyl/Alkynyl Pyridine Enables Ultrafast Cysteine-Selective Protein Modification and Charge Modulation.

Authors:  Maria J Matos; Claudio D Navo; Tuuli Hakala; Xhenti Ferhati; Ana Guerreiro; David Hartmann; Barbara Bernardim; Kadi L Saar; Ismael Compañón; Francisco Corzana; Tuomas P J Knowles; Gonzalo Jiménez-Osés; Gonçalo J L Bernardes
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-09       Impact factor: 15.336

5.  Photo-SNAP-tag, a Light-Regulated Chemical Labeling System.

Authors:  Joseph D Cleveland; Chandra L Tucker
Journal:  ACS Chem Biol       Date:  2020-07-16       Impact factor: 5.100

Review 6.  Targeting the N terminus for site-selective protein modification.

Authors:  Christian B Rosen; Matthew B Francis
Journal:  Nat Chem Biol       Date:  2017-06-20       Impact factor: 15.040

7.  Bright photoactivatable fluorophores for single-molecule imaging.

Authors:  Jonathan B Grimm; Brian P English; Heejun Choi; Anand K Muthusamy; Brian P Mehl; Peng Dong; Timothy A Brown; Jennifer Lippincott-Schwartz; Zhe Liu; Timothée Lionnet; Luke D Lavis
Journal:  Nat Methods       Date:  2016-10-24       Impact factor: 28.547

8.  Unraveling cell-to-cell signaling networks with chemical biology.

Authors:  Zev J Gartner; Jennifer A Prescher; Luke D Lavis
Journal:  Nat Chem Biol       Date:  2017-05-17       Impact factor: 15.040

9.  Genetic code expansion in the mouse brain.

Authors:  Russell J Ernst; Toke P Krogager; Elizabeth S Maywood; Roberto Zanchi; Václav Beránek; Thomas S Elliott; Nicholas P Barry; Michael H Hastings; Jason W Chin
Journal:  Nat Chem Biol       Date:  2016-08-29       Impact factor: 15.040

10.  Versatile On-Demand Fluorescent Labeling of Fusion Proteins Using Fluorescence-Activating and Absorption-Shifting Tag (FAST).

Authors:  Arnaud Gautier; Ludovic Jullien; Chenge Li; Marie-Aude Plamont; Alison G Tebo; Marion Thauvin; Michel Volovitch; Sophie Vriz
Journal:  Methods Mol Biol       Date:  2021
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.