Literature DB >> 26555247

The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi.

Jun Yan1,2,3,4, Burcu Şimşir1,2,5, Abigail T Farmer6, Meng Bi1,2,5, Yi Yang1,2,5, Shawn R Campagna6, Frank E Löffler1,2,3,4,5.   

Abstract

Corrinoid auxotrophic organohalide-respiring Dehalococcoides mccartyi (Dhc) strains are keystone bacteria for reductive dechlorination of toxic and carcinogenic chloroorganic contaminants. We demonstrate that the lower base attached to the essential corrinoid cofactor of reductive dehalogenase (RDase) enzyme systems modulates dechlorination activity and affects the vinyl chloride (VC) RDases BvcA and VcrA differently. Amendment of 5,6-dimethylbenzimidazolyl-cobamide (DMB-Cba) to Dhc strain BAV1 and strain GT cultures supported cis-1,2-dichloroethene-to-ethene reductive dechlorination at rates of 107.0 (±12.0) μM and 67.4 (±1.4) μM Cl(-) released per day, respectively. Strain BAV1, expressing the BvcA RDase, reductively dechlorinated VC to ethene, although at up to fivefold lower rates in cultures amended with cobamides carrying 5-methylbenzimidazole (5-MeBza), 5-methoxybenzimidazole (5-OMeBza) or benzimidazole (Bza) as the lower base. In contrast, strain GT harboring the VcrA RDase failed to grow and dechlorinate VC to ethene in medium amended with 5-OMeBza-Cba or Bza-Cba. The amendment with DMB to inactive strain GT cultures restored the VC-to-ethene-dechlorinating phenotype and intracellular DMB-Cba was produced, demonstrating cobamide uptake and remodeling. The distinct responses of Dhc strains with BvcA versus VcrA RDases to different cobamides implicate that the lower base exerts control over Dhc reductive dechlorination rates and extents (that is, detoxification), and therefore the dynamics of Dhc strains with discrete reductive dechlorination capabilities. These findings emphasize that the role of the corrinoid/lower base synthesizing community must be understood to predict strain-specific Dhc activity and achieve efficacious contaminated site cleanup.

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Year:  2015        PMID: 26555247      PMCID: PMC5029212          DOI: 10.1038/ismej.2015.197

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  39 in total

Review 1.  Microbial production of vitamin B12.

Authors:  J H Martens; H Barg; M J Warren; D Jahn
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2.  FORMATION OF METHANE BY BACTERIAL EXTRACTS.

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Authors:  P Lengyel; R Mazumder; S Ochoa
Journal:  Proc Natl Acad Sci U S A       Date:  1960-10       Impact factor: 11.205

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7.  Biochemical and EPR-spectroscopic investigation into heterologously expressed vinyl chloride reductive dehalogenase (VcrA) from Dehalococcoides mccartyi strain VS.

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  21 in total

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2.  Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

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Journal:  ISME J       Date:  2017-08-15       Impact factor: 10.302

3.  Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates.

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4.  Flexible Cobamide Metabolism in Clostridioides (Clostridium) difficile 630 Δerm.

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Review 6.  The organohalide-respiring bacterium Sulfurospirillum multivorans: a natural source for unusual cobamides.

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9.  Selective Utilization of Benzimidazolyl-Norcobamides as Cofactors by the Tetrachloroethene Reductive Dehalogenase of Sulfurospirillum multivorans.

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10.  Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene.

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Journal:  ISME J       Date:  2021-01-21       Impact factor: 10.302

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