Literature DB >> 28401391

Temporal abundance and activity trends of vinyl chloride (VC)-degrading bacteria in a dilute VC plume at Naval Air Station Oceana.

Yi Liang1, Laura J Cook2, Timothy E Mattes3.   

Abstract

Assessment and monitoring of microbial community dynamics is useful when tracking the progress of vinyl chloride (VC) bioremediation strategies, particularly in dilute plumes where apparent VC attenuation rates are low. In a long-term field study, the abundance and the activity of microbial VC degraders were tracked in three monitoring wells (MW05, MW25, and MW19) along a dilute VC plume at Naval Air Station (NAS) Oceana. High-throughput sequencing of partial 16S ribosomal RNA (rRNA) genes and transcripts revealed diverse groundwater microbial communities and showed that methanotrophs and anaerobic respirers (e.g., methanogens, sulfate reducers, and iron reducers) were among the most active and abundant guilds. Quantitative PCR analysis showed that among bacterial guilds with a potential to contribute to VC biodegradation, methanotrophs were the most abundant and active microbial group. Ethene-oxidizing bacterial populations were less abundant and relatively inactive compared to methanotrophs. In MW19, expression of functional genes associated with both aerobic VC oxidation and anaerobic VC reduction was observed. Overall, our results reveal that the groundwater community contains various active bacterial guilds previously associated with metabolic and cometabolic VC degradation processes either under aerobic and anaerobic conditions that might have contributed to the slowly decreasing VC concentrations at the NAS Oceana site over the 6-year study period.

Entities:  

Keywords:  Bioremediation; Biostimulation; Etheneotroph; Methanotroph; Natural attenuation; Reductive dechlorination; Vinyl chloride

Mesh:

Substances:

Year:  2017        PMID: 28401391     DOI: 10.1007/s11356-017-8948-y

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  58 in total

1.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 2.  Real-time PCR quantification of Dehalococcoides populations: methods and applications.

Authors:  Alison M Cupples
Journal:  J Microbiol Methods       Date:  2007-11-19       Impact factor: 2.363

3.  An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene.

Authors:  David R Johnson; Patrick K H Lee; Victor F Holmes; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2005-07       Impact factor: 4.792

4.  Small-scale oxygen distribution determines the vinyl chloride biodegradation pathway in surficial sediments of riverbed hyporheic zones.

Authors:  Siavash Atashgahi; Farai Maphosa; Eylem Doğan; Hauke Smidt; Dirk Springael; Winnie Dejonghe
Journal:  FEMS Microbiol Ecol       Date:  2012-12-13       Impact factor: 4.194

5.  Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.

Authors:  Frank E Löffler; Jun Yan; Kirsti M Ritalahti; Lorenz Adrian; Elizabeth A Edwards; Konstantinos T Konstantinidis; Jochen A Müller; Heather Fullerton; Stephen H Zinder; Alfred M Spormann
Journal:  Int J Syst Evol Microbiol       Date:  2012-04-27       Impact factor: 2.747

6.  Sustained aerobic oxidation of vinyl chloride at low oxygen concentrations.

Authors:  James M Gossett
Journal:  Environ Sci Technol       Date:  2010-02-15       Impact factor: 9.028

7.  Natural formation of vinyl chloride in the terrestrial environment.

Authors:  Frank Keppler; Reinhard Borchers; Jens Pracht; Stefan Rheinberger; Heinz F Scholer
Journal:  Environ Sci Technol       Date:  2002-06-01       Impact factor: 9.028

8.  Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.

Authors:  Rosa Krajmalnik-Brown; Tina Hölscher; Ivy N Thomson; F Michael Saunders; Kirsti M Ritalahti; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

9.  Oxygen effect on Dehalococcoides viability and biomarker quantification.

Authors:  Benjamin K Amos; Kirsti M Ritalahti; Claribel Cruz-Garcia; Elizabeth Padilla-Crespo; Frank E Löffler
Journal:  Environ Sci Technol       Date:  2008-08-01       Impact factor: 9.028

10.  The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi.

Authors:  Jun Yan; Burcu Şimşir; Abigail T Farmer; Meng Bi; Yi Yang; Shawn R Campagna; Frank E Löffler
Journal:  ISME J       Date:  2015-11-10       Impact factor: 10.302

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