Literature DB >> 26551560

Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.

Jan J Zylicz1,2,3, Sabine Dietmann3, Ufuk Günesdogan1,2, Jamie A Hackett1,2, Delphine Cougot1,2, Caroline Lee1,2, M Azim Surani1,2.   

Abstract

Early mouse development is accompanied by dynamic changes in chromatin modifications, including G9a-mediated histone H3 lysine 9 dimethylation (H3K9me2), which is essential for embryonic development. Here we show that genome-wide accumulation of H3K9me2 is crucial for postimplantation development, and coincides with redistribution of enhancer of zeste homolog 2 (EZH2)-dependent histone H3 lysine 27 trimethylation (H3K27me3). Loss of G9a or EZH2 results in upregulation of distinct gene sets involved in cell cycle regulation, germline development and embryogenesis. Notably, the H3K9me2 modification extends to active enhancer elements where it promotes developmentally-linked gene silencing and directly marks promoters and gene bodies. This epigenetic mechanism is important for priming gene regulatory networks for critical cell fate decisions in rapidly proliferating postimplantation epiblast cells.

Entities:  

Keywords:  chromosomes; developmental biology; epiblast; epigenetics; genes; histone; mouse; post-implantation; primed pluripotency; stem cells

Mesh:

Substances:

Year:  2015        PMID: 26551560      PMCID: PMC4729692          DOI: 10.7554/eLife.09571

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  64 in total

1.  The rhox homeobox gene cluster is imprinted and selectively targeted for regulation by histone h1 and DNA methylation.

Authors:  James A Maclean; Anilkumar Bettegowda; Byung Ju Kim; Chih-Hong Lou; Seung-Min Yang; Anjana Bhardwaj; Sreenath Shanker; Zhiying Hu; Yuhong Fan; Sigrid Eckardt; K John McLaughlin; Arthur I Skoultchi; Miles F Wilkinson
Journal:  Mol Cell Biol       Date:  2011-01-18       Impact factor: 4.272

2.  Protein kinase A determines timing of early differentiation through epigenetic regulation with G9a.

Authors:  Kohei Yamamizu; Mayako Fujihara; Makoto Tachibana; Shiori Katayama; Akiko Takahashi; Eiji Hara; Hiroshi Imai; Yoichi Shinkai; Jun K Yamashita
Journal:  Cell Stem Cell       Date:  2012-06-14       Impact factor: 24.633

3.  Epigenetic reprogramming in mouse primordial germ cells.

Authors:  Petra Hajkova; Sylvia Erhardt; Natasha Lane; Thomas Haaf; Osman El-Maarri; Wolf Reik; Jörn Walter; M Azim Surani
Journal:  Mech Dev       Date:  2002-09       Impact factor: 1.882

4.  Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo.

Authors:  Jennifer Nichols; Jose Silva; Mila Roode; Austin Smith
Journal:  Development       Date:  2009-08-26       Impact factor: 6.868

5.  The transcriptional and epigenomic foundations of ground state pluripotency.

Authors:  Hendrik Marks; Tüzer Kalkan; Roberta Menafra; Sergey Denissov; Kenneth Jones; Helmut Hofemeister; Jennifer Nichols; Andrea Kranz; A Francis Stewart; Austin Smith; Hendrik G Stunnenberg
Journal:  Cell       Date:  2012-04-27       Impact factor: 41.582

6.  Naive pluripotency is associated with global DNA hypomethylation.

Authors:  Harry G Leitch; Kirsten R McEwen; Aleksandra Turp; Vesela Encheva; Tom Carroll; Nils Grabole; William Mansfield; Buhe Nashun; Jaysen G Knezovich; Austin Smith; M Azim Surani; Petra Hajkova
Journal:  Nat Struct Mol Biol       Date:  2013-02-17       Impact factor: 15.369

7.  Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells.

Authors:  Florian Lienert; Fabio Mohn; Vijay K Tiwari; Tuncay Baubec; Tim C Roloff; Dimos Gaidatzis; Michael B Stadler; Dirk Schübeler
Journal:  PLoS Genet       Date:  2011-06-02       Impact factor: 5.917

8.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

9.  The long-range interaction landscape of gene promoters.

Authors:  Amartya Sanyal; Bryan R Lajoie; Gaurav Jain; Job Dekker
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

10.  Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells.

Authors:  Bo Wen; Hao Wu; Yoichi Shinkai; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

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  51 in total

1.  Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos.

Authors:  Ila van Kruijsbergen; Saartje Hontelez; Dei M Elurbe; Simon J van Heeringen; Martijn A Huynen; Gert Jan C Veenstra
Journal:  Dev Biol       Date:  2016-09-14       Impact factor: 3.582

2.  CNTN5-/+or EHMT2-/+human iPSC-derived neurons from individuals with autism develop hyperactive neuronal networks.

Authors:  Eric Deneault; Muhammad Faheem; Sean H White; Deivid C Rodrigues; Song Sun; Wei Wei; Alina Piekna; Tadeo Thompson; Jennifer L Howe; Leon Chalil; Vickie Kwan; Susan Walker; Peter Pasceri; Frederick P Roth; Ryan Kc Yuen; Karun K Singh; James Ellis; Stephen W Scherer
Journal:  Elife       Date:  2019-02-12       Impact factor: 8.140

Review 3.  The interplay of epigenetic marks during stem cell differentiation and development.

Authors:  Yaser Atlasi; Hendrik G Stunnenberg
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

Review 4.  A drive in SUVs: From development to disease.

Authors:  Vinay Kumar Rao; Ananya Pal; Reshma Taneja
Journal:  Epigenetics       Date:  2017-01-20       Impact factor: 4.528

5.  Dynamic epigenomic landscapes during early lineage specification in mouse embryos.

Authors:  Yu Zhang; Yunlong Xiang; Qiangzong Yin; Zhenhai Du; Xu Peng; Qiujun Wang; Miguel Fidalgo; Weikun Xia; Yuanyuan Li; Zhen-Ao Zhao; Wenhao Zhang; Jing Ma; Feng Xu; Jianlong Wang; Lei Li; Wei Xie
Journal:  Nat Genet       Date:  2017-12-04       Impact factor: 38.330

6.  Silencing of developmental genes by H3K27me3 and DNA methylation reflects the discrepant plasticity of embryonic and extraembryonic lineages.

Authors:  Xianfa Yang; Boqiang Hu; Yu Hou; Yunbo Qiao; Ran Wang; Yingying Chen; Yun Qian; Su Feng; Jun Chen; Chang Liu; Guangdun Peng; Fuchou Tang; Naihe Jing
Journal:  Cell Res       Date:  2018-02-20       Impact factor: 25.617

Review 7.  Capturing Human Naïve Pluripotency in the Embryo and in the Dish.

Authors:  Ludovic Zimmerlin; Tea Soon Park; Elias T Zambidis
Journal:  Stem Cells Dev       Date:  2017-06-26       Impact factor: 3.272

8.  The expanding role of the Ehmt2/G9a complex in neurodevelopment.

Authors:  Steven J Deimling; Jonathan B Olsen; Vincent Tropepe
Journal:  Neurogenesis (Austin)       Date:  2017-05-02

9.  Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells.

Authors:  Yoshiki Higashijima; Yusuke Matsui; Teppei Shimamura; Ryo Nakaki; Nao Nagai; Shuichi Tsutsumi; Yohei Abe; Verena M Link; Mizuko Osaka; Masayuki Yoshida; Ryo Watanabe; Toshihiro Tanaka; Akashi Taguchi; Mai Miura; Xiaoan Ruan; Guoliang Li; Tsuyoshi Inoue; Masaomi Nangaku; Hiroshi Kimura; Tetsushi Furukawa; Hiroyuki Aburatani; Youichiro Wada; Yijun Ruan; Christopher K Glass; Yasuharu Kanki
Journal:  EMBO J       Date:  2020-03-03       Impact factor: 11.598

10.  EHMT2 and SETDB1 protect the maternal pronucleus from 5mC oxidation.

Authors:  Tie-Bo Zeng; Li Han; Nicholas Pierce; Gerd P Pfeifer; Piroska E Szabó
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-14       Impact factor: 11.205

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