Literature DB >> 26541607

Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis.

Naresh K Hanchate1, Kunio Kondoh1, Zhonghua Lu1, Donghui Kuang1, Xiaolan Ye1, Xiaojie Qiu2, Lior Pachter3, Cole Trapnell4, Linda B Buck5.   

Abstract

The sense of smell allows chemicals to be perceived as diverse scents. We used single-neuron RNA sequencing to explore the developmental mechanisms that shape this ability as nasal olfactory neurons mature in mice. Most mature neurons expressed only one of the ~1000 odorant receptor genes (Olfrs) available, and at a high level. However, many immature neurons expressed low levels of multiple Olfrs. Coexpressed Olfrs localized to overlapping zones of the nasal epithelium, suggesting regional biases, but not to single genomic loci. A single immature neuron could express Olfrs from up to seven different chromosomes. The mature state in which expression of Olfr genes is restricted to one per neuron emerges over a developmental progression that appears to be independent of neuronal activity involving sensory transduction molecules.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 26541607      PMCID: PMC5642900          DOI: 10.1126/science.aad2456

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  32 in total

Review 1.  Transcriptional regulation of neurogenesis in the olfactory epithelium.

Authors:  Danette J Nicolay; J Ronald Doucette; Adil J Nazarali
Journal:  Cell Mol Neurobiol       Date:  2006-05-18       Impact factor: 5.046

Review 2.  Chemosensory receptor specificity and regulation.

Authors:  Ryan P Dalton; Stavros Lomvardas
Journal:  Annu Rev Neurosci       Date:  2015-04-22       Impact factor: 12.449

3.  Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.

Authors:  Saiful Islam; Una Kjällquist; Annalena Moliner; Pawel Zajac; Jian-Bing Fan; Peter Lönnerberg; Sten Linnarsson
Journal:  Genome Res       Date:  2011-05-04       Impact factor: 9.043

4.  A multigene family encoding a diverse array of putative pheromone receptors in mammals.

Authors:  H Matsunami; L B Buck
Journal:  Cell       Date:  1997-08-22       Impact factor: 41.582

5.  Odorant receptors regulate the final glomerular coalescence of olfactory sensory neuron axons.

Authors:  Diego J Rodriguez-Gil; Dianna L Bartel; Austin W Jaspers; Arie S Mobley; Fumiaki Imamura; Charles A Greer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

6.  Spatial segregation of odorant receptor expression in the mammalian olfactory epithelium.

Authors:  R Vassar; J Ngai; R Axel
Journal:  Cell       Date:  1993-07-30       Impact factor: 41.582

7.  Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.

Authors:  Cole Trapnell; Brian A Williams; Geo Pertea; Ali Mortazavi; Gordon Kwan; Marijke J van Baren; Steven L Salzberg; Barbara J Wold; Lior Pachter
Journal:  Nat Biotechnol       Date:  2010-05-02       Impact factor: 54.908

8.  The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

Authors:  Cole Trapnell; Davide Cacchiarelli; Jonna Grimsby; Prapti Pokharel; Shuqiang Li; Michael Morse; Niall J Lennon; Kenneth J Livak; Tarjei S Mikkelsen; John L Rinn
Journal:  Nat Biotechnol       Date:  2014-03-23       Impact factor: 54.908

9.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Authors:  Daehwan Kim; Geo Pertea; Cole Trapnell; Harold Pimentel; Ryan Kelley; Steven L Salzberg
Journal:  Genome Biol       Date:  2013-04-25       Impact factor: 13.583

10.  Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.

Authors:  Alex K Shalek; Rahul Satija; Joe Shuga; John J Trombetta; Dave Gennert; Diana Lu; Peilin Chen; Rona S Gertner; Jellert T Gaublomme; Nir Yosef; Schraga Schwartz; Brian Fowler; Suzanne Weaver; Jing Wang; Xiaohui Wang; Ruihua Ding; Raktima Raychowdhury; Nir Friedman; Nir Hacohen; Hongkun Park; Andrew P May; Aviv Regev
Journal:  Nature       Date:  2014-06-11       Impact factor: 49.962

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  83 in total

1.  Spatial Determination of Neuronal Diversification in the Olfactory Epithelium.

Authors:  Julie H Coleman; Brian Lin; Jonathan D Louie; Jesse Peterson; Robert P Lane; James E Schwob
Journal:  J Neurosci       Date:  2018-12-10       Impact factor: 6.167

2.  A Near-Complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium.

Authors:  Longzhi Tan; Xiaoliang Sunney Xie
Journal:  Chem Senses       Date:  2018-07-05       Impact factor: 3.160

3.  scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.

Authors:  Yingxin Lin; Shila Ghazanfar; Kevin Y X Wang; Johann A Gagnon-Bartsch; Kitty K Lo; Xianbin Su; Ze-Guang Han; John T Ormerod; Terence P Speed; Pengyi Yang; Jean Yee Hwa Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-26       Impact factor: 11.205

Review 4.  Understanding development and stem cells using single cell-based analyses of gene expression.

Authors:  Pavithra Kumar; Yuqi Tan; Patrick Cahan
Journal:  Development       Date:  2017-01-01       Impact factor: 6.868

5.  Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.

Authors:  Russell B Fletcher; Diya Das; Levi Gadye; Kelly N Street; Ariane Baudhuin; Allon Wagner; Michael B Cole; Quetzal Flores; Yoon Gi Choi; Nir Yosef; Elizabeth Purdom; Sandrine Dudoit; Davide Risso; John Ngai
Journal:  Cell Stem Cell       Date:  2017-05-11       Impact factor: 24.633

6.  Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons.

Authors:  Csaba Földy; Spyros Darmanis; Jason Aoto; Robert C Malenka; Stephen R Quake; Thomas C Südhof
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-16       Impact factor: 11.205

7.  Achieving diverse and monoallelic olfactory receptor selection through dual-objective optimization design.

Authors:  Xiao-Jun Tian; Hang Zhang; Jens Sannerud; Jianhua Xing
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

8.  Combinatorial effects of odorants on mouse behavior.

Authors:  Luis R Saraiva; Kunio Kondoh; Xiaolan Ye; Kyoung-Hye Yoon; Marcus Hernandez; Linda B Buck
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-20       Impact factor: 11.205

9.  Single cell transcriptome analysis of mouse carotid body glomus cells.

Authors:  Ting Zhou; Ming-Shan Chien; Safa Kaleem; Hiroaki Matsunami
Journal:  J Physiol       Date:  2016-04-13       Impact factor: 5.182

10.  A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period.

Authors:  Yunming Wu; Limei Ma; Kyle Duyck; Carter C Long; Andrea Moran; Hayley Scheerer; Jillian Blanck; Allison Peak; Andrew Box; Anoja Perera; C Ron Yu
Journal:  Neuron       Date:  2018-10-25       Impact factor: 17.173

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