Literature DB >> 28506465

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.

Russell B Fletcher1, Diya Das1, Levi Gadye2, Kelly N Street3, Ariane Baudhuin1, Allon Wagner4, Michael B Cole5, Quetzal Flores1, Yoon Gi Choi6, Nir Yosef4, Elizabeth Purdom7, Sandrine Dudoit8, Davide Risso9, John Ngai10.   

Abstract

A detailed understanding of the paths that stem cells traverse to generate mature progeny is vital for elucidating the mechanisms governing cell fate decisions and tissue homeostasis. Adult stem cells maintain and regenerate multiple mature cell lineages in the olfactory epithelium. Here we integrate single-cell RNA sequencing and robust statistical analyses with in vivo lineage tracing to define a detailed map of the postnatal olfactory epithelium, revealing cell fate potentials and branchpoints in olfactory stem cell lineage trajectories. Olfactory stem cells produce support cells via direct fate conversion in the absence of cell division, and their multipotency at the population level reflects collective unipotent cell fate decisions by single stem cells. We further demonstrate that Wnt signaling regulates stem cell fate by promoting neuronal fate choices. This integrated approach reveals the mechanisms guiding olfactory lineage trajectories and provides a model for deconstructing similar hierarchies in other stem cell niches.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  HBC; Wnt; branching lineage; horizontal basal cell; lineage trajectory; olfactory epithelium; scRNA-seq; stem cells

Mesh:

Year:  2017        PMID: 28506465      PMCID: PMC5484588          DOI: 10.1016/j.stem.2017.04.003

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  79 in total

1.  The Lim homeobox gene Lhx2 is required for olfactory sensory neuron identity.

Authors:  Asa Kolterud; Mattias Alenius; Leif Carlsson; Staffan Bohm
Journal:  Development       Date:  2004-09-29       Impact factor: 6.868

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3.  Using Flp-recombinase to characterize expansion of Wnt1-expressing neural progenitors in the mouse.

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4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  Near-optimal probabilistic RNA-seq quantification.

Authors:  Nicolas L Bray; Harold Pimentel; Páll Melsted; Lior Pachter
Journal:  Nat Biotechnol       Date:  2016-04-04       Impact factor: 54.908

6.  Transcriptome Analysis of Murine Olfactory Sensory Neurons during Development Using Single Cell RNA-Seq.

Authors:  Paul Scholz; Benjamin Kalbe; Fabian Jansen; Janine Altmueller; Christian Becker; Julia Mohrhardt; Benjamin Schreiner; Guenter Gisselmann; Hanns Hatt; Sabrina Osterloh
Journal:  Chem Senses       Date:  2016-02-02       Impact factor: 3.160

7.  Inactivation of the beta-catenin gene by Wnt1-Cre-mediated deletion results in dramatic brain malformation and failure of craniofacial development.

Authors:  V Brault; R Moore; S Kutsch; M Ishibashi; D H Rowitch; A P McMahon; L Sommer; O Boussadia; R Kemler
Journal:  Development       Date:  2001-04       Impact factor: 6.868

8.  How the cell cycle impacts chromatin architecture and influences cell fate.

Authors:  Yiqin Ma; Kiriaki Kanakousaki; Laura Buttitta
Journal:  Front Genet       Date:  2015-02-03       Impact factor: 4.599

9.  AP1 transcription factors in epidermal differentiation and skin cancer.

Authors:  Richard L Eckert; Gautam Adhikary; Christina A Young; Ralph Jans; James F Crish; Wen Xu; Ellen A Rorke
Journal:  J Skin Cancer       Date:  2013-05-23

10.  Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq.

Authors:  Luis R Saraiva; Ximena Ibarra-Soria; Mona Khan; Masayo Omura; Antonio Scialdone; Peter Mombaerts; John C Marioni; Darren W Logan
Journal:  Sci Rep       Date:  2015-12-16       Impact factor: 4.379

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  71 in total

1.  A Near-Complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium.

Authors:  Longzhi Tan; Xiaoliang Sunney Xie
Journal:  Chem Senses       Date:  2018-07-05       Impact factor: 3.160

2.  Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution.

Authors:  Xin-Xin Yu; Wei-Lin Qiu; Liu Yang; Yu Zhang; Mao-Yang He; Lin-Chen Li; Cheng-Ran Xu
Journal:  EMBO J       Date:  2019-02-08       Impact factor: 11.598

3.  Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID.

Authors:  Akira Cortal; Loredana Martignetti; Emmanuelle Six; Antonio Rausell
Journal:  Nat Biotechnol       Date:  2021-04-29       Impact factor: 54.908

4.  Acute N-Acetylcysteine Administration Ameliorates Loss of Olfactory Neurons Following Experimental Injury In Vivo.

Authors:  Stefania Goncalves; Bradley J Goldstein
Journal:  Anat Rec (Hoboken)       Date:  2019-01-25       Impact factor: 2.064

5.  Injury Induces Endogenous Reprogramming and Dedifferentiation of Neuronal Progenitors to Multipotency.

Authors:  Brian Lin; Julie H Coleman; Jesse N Peterson; Matthew J Zunitch; Woochan Jang; Daniel B Herrick; James E Schwob
Journal:  Cell Stem Cell       Date:  2017-11-22       Impact factor: 24.633

Review 6.  Creating Lineage Trajectory Maps Via Integration of Single-Cell RNA-Sequencing and Lineage Tracing: Integrating transgenic lineage tracing and single-cell RNA-sequencing is a robust approach for mapping developmental lineage trajectories and cell fate changes.

Authors:  Russell B Fletcher; Diya Das; John Ngai
Journal:  Bioessays       Date:  2018-06-26       Impact factor: 4.345

Review 7.  Maturation of the Olfactory Sensory Neuron and Its Cilia.

Authors:  Timothy S McClintock; Naazneen Khan; Chao Xie; Jeffrey R Martens
Journal:  Chem Senses       Date:  2020-12-05       Impact factor: 3.160

8.  Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq.

Authors:  Michael B Cole; Davide Risso; Allon Wagner; David DeTomaso; John Ngai; Elizabeth Purdom; Sandrine Dudoit; Nir Yosef
Journal:  Cell Syst       Date:  2019-04-24       Impact factor: 10.304

9.  Single-cell systems biology: probing the basic unit of information flow.

Authors:  Simona Patange; Michelle Girvan; Daniel R Larson
Journal:  Curr Opin Syst Biol       Date:  2017-12-06

10.  A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period.

Authors:  Yunming Wu; Limei Ma; Kyle Duyck; Carter C Long; Andrea Moran; Hayley Scheerer; Jillian Blanck; Allison Peak; Andrew Box; Anoja Perera; C Ron Yu
Journal:  Neuron       Date:  2018-10-25       Impact factor: 17.173

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