Literature DB >> 29796642

A Near-Complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium.

Longzhi Tan1,2, Xiaoliang Sunney Xie1.   

Abstract

Different regions of the mammalian nose smell different odors. In the mouse olfactory system, spatially regulated expression of >1000 olfactory receptors (ORs) along the dorsomedial-ventrolateral (DV) axis forms a topological map in the main olfactory epithelium (MOE). However, the locations of most ORs along the DV axis are currently unknown. By sequencing mRNA of 12 isolated MOE pieces, we mapped out the DV locations-as quantified by "zone indices" on a scale of 1-5-of 1033 OR genes with an estimated error of 0.3 zone indices. Our map covered 81% of all intact OR genes and 99.4% of the total OR mRNA abundance. Spatial regulation tended to vary gradually along chromosomes. We further identified putative non-OR genes that may exhibit spatial expression along the DV axis.

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Year:  2018        PMID: 29796642      PMCID: PMC6454507          DOI: 10.1093/chemse/bjy030

Source DB:  PubMed          Journal:  Chem Senses        ISSN: 0379-864X            Impact factor:   3.160


  45 in total

1.  Single-cell transcriptional profiles and spatial patterning of the mammalian olfactory epithelium.

Authors:  Ian Tietjen; Jason Rihel; Catherine G Dulac
Journal:  Int J Dev Biol       Date:  2005       Impact factor: 2.203

2.  Spatial segregation of odorant receptor expression in the mammalian olfactory epithelium.

Authors:  R Vassar; J Ngai; R Axel
Journal:  Cell       Date:  1993-07-30       Impact factor: 41.582

3.  A Family of non-GPCR Chemosensors Defines an Alternative Logic for Mammalian Olfaction.

Authors:  Paul L Greer; Daniel M Bear; Jean-Marc Lassance; Maria Lissitsyna Bloom; Tatsuya Tsukahara; Stan L Pashkovski; Francis Kei Masuda; Alexandra C Nowlan; Rory Kirchner; Hopi E Hoekstra; Sandeep Robert Datta
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

4.  Promoter architecture of mouse olfactory receptor genes.

Authors:  Charles Plessy; Giovanni Pascarella; Nicolas Bertin; Altuna Akalin; Claudia Carrieri; Anne Vassalli; Dejan Lazarevic; Jessica Severin; Christina Vlachouli; Roberto Simone; Geoffrey J Faulkner; Jun Kawai; Carsten O Daub; Silvia Zucchelli; Yoshihide Hayashizaki; Peter Mombaerts; Boris Lenhard; Stefano Gustincich; Piero Carninci
Journal:  Genome Res       Date:  2011-12-22       Impact factor: 9.043

5.  An epigenetic signature for monoallelic olfactory receptor expression.

Authors:  Angeliki Magklara; Angela Yen; Bradley M Colquitt; E Josephine Clowney; William Allen; Eirene Markenscoff-Papadimitriou; Zoe A Evans; Pouya Kheradpour; George Mountoufaris; Catriona Carey; Gilad Barnea; Manolis Kellis; Stavros Lomvardas
Journal:  Cell       Date:  2011-04-28       Impact factor: 41.582

6.  Regulation of cytochrome P450 gene expression in the olfactory mucosa.

Authors:  Guoyu Ling; Jun Gu; Mary Beth Genter; Xiaoliang Zhuo; Xinxin Ding
Journal:  Chem Biol Interact       Date:  2004-04-15       Impact factor: 5.192

7.  Foxg1 is required for development of the vertebrate olfactory system.

Authors:  Cynthia D Duggan; Shannon DeMaria; Ariane Baudhuin; David Stafford; John Ngai
Journal:  J Neurosci       Date:  2008-05-14       Impact factor: 6.167

8.  Olfactory receptor patterning in a higher primate.

Authors:  Lisa F Horowitz; Luis R Saraiva; Donghui Kuang; Kyoung-hye Yoon; Linda B Buck
Journal:  J Neurosci       Date:  2014-09-10       Impact factor: 6.167

9.  The olfactory transcriptomes of mice.

Authors:  Ximena Ibarra-Soria; Maria O Levitin; Luis R Saraiva; Darren W Logan
Journal:  PLoS Genet       Date:  2014-09-04       Impact factor: 5.917

10.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Authors:  Daehwan Kim; Geo Pertea; Cole Trapnell; Harold Pimentel; Ryan Kelley; Steven L Salzberg
Journal:  Genome Biol       Date:  2013-04-25       Impact factor: 13.583

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  12 in total

1.  Three-dimensional genome structures of single sensory neurons in mouse visual and olfactory systems.

Authors:  Longzhi Tan; Dong Xing; Nicholas Daley; X Sunney Xie
Journal:  Nat Struct Mol Biol       Date:  2019-04-01       Impact factor: 15.369

2.  Spatial Determination of Neuronal Diversification in the Olfactory Epithelium.

Authors:  Julie H Coleman; Brian Lin; Jonathan D Louie; Jesse Peterson; Robert P Lane; James E Schwob
Journal:  J Neurosci       Date:  2018-12-10       Impact factor: 6.167

Review 3.  Olfactory receptor genes make the case for inter-chromosomal interactions.

Authors:  Elizaveta Bashkirova; Stavros Lomvardas
Journal:  Curr Opin Genet Dev       Date:  2019-09-03       Impact factor: 5.578

4.  A Subset of Olfactory Sensory Neurons Express Forkhead Box J1-Driven eGFP.

Authors:  Eric D Larson; Shivani Pathak; Vijay R Ramakrishnan; Thomas E Finger
Journal:  Chem Senses       Date:  2019-10-26       Impact factor: 3.160

5.  Bioinformatics Discovery of Putative Enhancers within Mouse Odorant Receptor Gene Clusters.

Authors:  James E Farber; Robert P Lane
Journal:  Chem Senses       Date:  2019-10-26       Impact factor: 3.160

6.  A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell.

Authors:  Mayra L Ruiz Tejada Segura; Eman Abou Moussa; Elisa Garabello; Thiago S Nakahara; Melanie Makhlouf; Lisa S Mathew; Li Wang; Filippo Valle; Susie S Y Huang; Joel D Mainland; Michele Caselle; Matteo Osella; Stephan Lorenz; Johannes Reisert; Darren W Logan; Bettina Malnic; Antonio Scialdone; Luis R Saraiva
Journal:  Cell Rep       Date:  2022-03-22       Impact factor: 9.423

Review 7.  Primary sensory map formations reflect unique needs and molecular cues specific to each sensory system.

Authors:  Bernd Fritzsch; Karen L Elliott; Gabriela Pavlinkova
Journal:  F1000Res       Date:  2019-03-27

8.  Concentration-Dependent Recruitment of Mammalian Odorant Receptors.

Authors:  Xiaoyang Serene Hu; Kentaro Ikegami; Aashutosh Vihani; Kevin W Zhu; Marcelo Zapata; Claire A de March; Matthew Do; Natasha Vaidya; Gary Kucera; Cheryl Bock; Yue Jiang; Masafumi Yohda; Hiroaki Matsunami
Journal:  eNeuro       Date:  2020-04-23

Review 9.  Odor coding in the mammalian olfactory epithelium.

Authors:  Smija M Kurian; Rafaella G Naressi; Diogo Manoel; Ann-Sophie Barwich; Bettina Malnic; Luis R Saraiva
Journal:  Cell Tissue Res       Date:  2021-01-06       Impact factor: 5.249

10.  Semiochemical responsive olfactory sensory neurons are sexually dimorphic and plastic.

Authors:  Aashutosh Vihani; Xiaoyang Serene Hu; Sivaji Gundala; Sachiko Koyama; Eric Block; Hiroaki Matsunami
Journal:  Elife       Date:  2020-11-24       Impact factor: 8.140

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