Literature DB >> 26538152

Evolution and characterization of a benzylguanine-binding RNA aptamer.

J Xu1, T J Carrocci, A A Hoskins.   

Abstract

Repurposing the "protein-labeling toolkit" for RNA research could be a pragmatic approach for developing new RNA-labeling methods. We have evolved an RNA aptamer that tightly binds benzylguanine (bG), the key ligand for the protein SNAP-tag. The aptamer tightly binds bG fluorophores and can be purified from cellular RNA with bG agarose under native conditions.

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Year:  2015        PMID: 26538152      PMCID: PMC5020705          DOI: 10.1039/c5cc07605f

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  19 in total

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Authors:  Irina Nazarenko; Rick Pires; Brian Lowe; Mohamad Obaidy; Ayoub Rashtchian
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

2.  Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivo.

Authors:  Alexandre Juillerat; Thomas Gronemeyer; Antje Keppler; Susanne Gendreizig; Horst Pick; Horst Vogel; Kai Johnsson
Journal:  Chem Biol       Date:  2003-04

3.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.

Authors:  C Tuerk; L Gold
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

Review 4.  Fluorescent proteins and their applications in imaging living cells and tissues.

Authors:  Dmitriy M Chudakov; Mikhail V Matz; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Physiol Rev       Date:  2010-07       Impact factor: 37.312

5.  In vivo protein labeling with trimethoprim conjugates: a flexible chemical tag.

Authors:  Lawrence W Miller; Yunfei Cai; Michael P Sheetz; Virginia W Cornish
Journal:  Nat Methods       Date:  2005-04       Impact factor: 28.547

Review 6.  Quantitative approaches to monitor protein-nucleic acid interactions using fluorescent probes.

Authors:  John M Pagano; Carina C Clingman; Sean P Ryder
Journal:  RNA       Date:  2010-11-22       Impact factor: 4.942

Review 7.  Enzymatic labeling of proteins: techniques and approaches.

Authors:  Mohammad Rashidian; Jonathan K Dozier; Mark D Distefano
Journal:  Bioconjug Chem       Date:  2013-08-21       Impact factor: 4.774

8.  Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cells.

Authors:  Peter J Bosch; Ivan R Corrêa; Michael H Sonntag; Jenny Ibach; Luc Brunsveld; Johannes S Kanger; Vinod Subramaniam
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

9.  The RNase protection assay.

Authors:  Michael F Carey; Craig L Peterson; Stephen T Smale
Journal:  Cold Spring Harb Protoc       Date:  2013-03-01

10.  Imaging of RNAs in live cells with spectrally diverse small molecule fluorophores.

Authors:  Tucker J Carrocci; Aaron A Hoskins
Journal:  Analyst       Date:  2013-11-01       Impact factor: 4.616

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  6 in total

1.  Solid-Phase Synthesis of Megamolecules.

Authors:  Blaise R Kimmel; Justin A Modica; Kelly Parker; Vinayak Dravid; Milan Mrksich
Journal:  J Am Chem Soc       Date:  2020-03-03       Impact factor: 15.419

Review 2.  Small-Molecule Binding Aptamers: Selection Strategies, Characterization, and Applications.

Authors:  Annamaria Ruscito; Maria C DeRosa
Journal:  Front Chem       Date:  2016-05-10       Impact factor: 5.221

Review 3.  Aptamers for DNA Damage and Repair.

Authors:  Maureen McKeague
Journal:  Int J Mol Sci       Date:  2017-10-22       Impact factor: 5.923

Review 4.  Illuminating Messengers: An Update and Outlook on RNA Visualization in Bacteria.

Authors:  Lieke A van Gijtenbeek; Jan Kok
Journal:  Front Microbiol       Date:  2017-06-22       Impact factor: 5.640

5.  Genetically encoded fluorescent tags.

Authors:  Kurt Thorn
Journal:  Mol Biol Cell       Date:  2017-04-01       Impact factor: 4.138

Review 6.  Key Aspects of Nucleic Acid Library Design for in Vitro Selection.

Authors:  Maria A Vorobyeva; Anna S Davydova; Pavel E Vorobjev; Alya G Venyaminova
Journal:  Int J Mol Sci       Date:  2018-02-05       Impact factor: 5.923

  6 in total

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