Literature DB >> 23837885

Enzymatic labeling of proteins: techniques and approaches.

Mohammad Rashidian, Jonathan K Dozier, Mark D Distefano.   

Abstract

Site-specific modification of proteins is a major challenge in modern chemical biology due to the large number of reactive functional groups typically present in polypeptides. Because of its importance in biology and medicine, the development of methods for site-specific modification of proteins is an area of intense research. Selective protein modification procedures have been useful for oriented protein immobilization, for studies of naturally occurring post-translational modifications, for creating antibody–drug conjugates, for the introduction of fluorophores and other small molecules on to proteins, for examining protein structure, folding, dynamics, and protein–protein interactions, and for the preparation of protein–polymer conjugates. One of the most important approaches for protein labeling is to incorporate bioorthogonal functionalities into proteins at specific sites via enzymatic reactions. The incorporated tags then enable reactions that are chemoselective, whose functional groups not only are inert in biological media, but also do not occur natively in proteins or other macromolecules. This review article summarizes the enzymatic strategies, which enable site-specific functionalization of proteins with a variety of different functional groups. The enzymes covered in this review include formylglycine generating enzyme, sialyltransferases, phosphopantetheinyltransferases, O-GlcNAc post-translational modification, sortagging, transglutaminase, farnesyltransferase, biotin ligase, lipoic acid ligase, and N-myristoyltransferase.

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Year:  2013        PMID: 23837885      PMCID: PMC3864113          DOI: 10.1021/bc400102w

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  132 in total

1.  Modular Peptide Synthetases Involved in Nonribosomal Peptide Synthesis.

Authors:  Mohamed A. Marahiel; Torsten Stachelhaus; Henning D. Mootz
Journal:  Chem Rev       Date:  1997-11-10       Impact factor: 60.622

Review 2.  The Staudinger ligation-a gift to chemical biology.

Authors:  Maja Köhn; Rolf Breinbauer
Journal:  Angew Chem Int Ed Engl       Date:  2004-06-14       Impact factor: 15.336

3.  A multifunctional Pasteurella multocida sialyltransferase: a powerful tool for the synthesis of sialoside libraries.

Authors:  Hai Yu; Harshal Chokhawala; Rebekah Karpel; Hui Yu; Bingyuan Wu; Jianbo Zhang; Yingxin Zhang; Qiang Jia; Xi Chen
Journal:  J Am Chem Soc       Date:  2005-12-21       Impact factor: 15.419

4.  Nucleophilic catalysis of oxime ligation.

Authors:  Anouk Dirksen; Tilman M Hackeng; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-20       Impact factor: 15.336

Review 5.  Increasing the sialylation of therapeutic glycoproteins: the potential of the sialic acid biosynthetic pathway.

Authors:  Kaya Bork; Rüdiger Horstkorte; Wenke Weidemann
Journal:  J Pharm Sci       Date:  2009-10       Impact factor: 3.534

6.  Protein-protein interaction detection in vitro and in cells by proximity biotinylation.

Authors:  Marta Fernández-Suárez; T Scott Chen; Alice Y Ting
Journal:  J Am Chem Soc       Date:  2008-06-27       Impact factor: 15.419

7.  Chemoenzymatic reversible immobilization and labeling of proteins without prior purification.

Authors:  Mohammad Rashidian; James M Song; Rachel E Pricer; Mark D Distefano
Journal:  J Am Chem Soc       Date:  2012-05-08       Impact factor: 15.419

8.  Genetically encoded short peptide tag for versatile protein labeling by Sfp phosphopantetheinyl transferase.

Authors:  Jun Yin; Paul D Straight; Shaun M McLoughlin; Zhe Zhou; Alison J Lin; David E Golan; Neil L Kelleher; Roberto Kolter; Christopher T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-19       Impact factor: 11.205

9.  A highly efficient catalyst for oxime ligation and hydrazone-oxime exchange suitable for bioconjugation.

Authors:  Mohammad Rashidian; Mohammad M Mahmoodi; Rachit Shah; Jonathan K Dozier; Carston R Wagner; Mark D Distefano
Journal:  Bioconjug Chem       Date:  2013-03-06       Impact factor: 4.774

10.  A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.

Authors:  Kyle J Roux; Dae In Kim; Manfred Raida; Brian Burke
Journal:  J Cell Biol       Date:  2012-03-12       Impact factor: 10.539

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  59 in total

1.  Site Selection: a Case Study in the Identification of Optimal Cysteine Engineered Antibody Drug Conjugates.

Authors:  L Nathan Tumey; Fengping Li; Brian Rago; Xiaogang Han; Frank Loganzo; Sylvia Musto; Edmund I Graziani; Sujiet Puthenveetil; Jeffrey Casavant; Kimberly Marquette; Tracey Clark; Jack Bikker; Eric M Bennett; Frank Barletta; Nicole Piche-Nicholas; Amy Tam; Christopher J O'Donnell; Hans Peter Gerber; Lioudmila Tchistiakova
Journal:  AAPS J       Date:  2017-04-24       Impact factor: 4.009

Review 2.  Biomolecular engineering for nanobio/bionanotechnology.

Authors:  Teruyuki Nagamune
Journal:  Nano Converg       Date:  2017-04-24

3.  Protein Labeling via a Specific Lysine-Isopeptide Bond Using the Pilin Polymerizing Sortase from Corynebacterium diphtheriae.

Authors:  Scott A McConnell; Brendan R Amer; John Muroski; Janine Fu; Chungyu Chang; Rachel R Ogorzalek Loo; Joseph A Loo; Jerzy Osipiuk; Hung Ton-That; Robert T Clubb
Journal:  J Am Chem Soc       Date:  2018-06-28       Impact factor: 15.419

Review 4.  Chemically programmed antibodies.

Authors:  Christoph Rader
Journal:  Trends Biotechnol       Date:  2014-03-11       Impact factor: 19.536

5.  Spirohexene-Tetrazine Ligation Enables Bioorthogonal Labeling of Class B G Protein-Coupled Receptors in Live Cells.

Authors:  Carlo P Ramil; Maoqing Dong; Peng An; Tracey M Lewandowski; Zhipeng Yu; Laurence J Miller; Qing Lin
Journal:  J Am Chem Soc       Date:  2017-09-15       Impact factor: 15.419

Review 6.  A molecular engineering toolbox for the structural biologist.

Authors:  Galia T Debelouchina; Tom W Muir
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

7.  Design Principles for SuCESsFul Biosensors: Specific Fluorophore/Analyte Binding and Minimization of Fluorophore/Scaffold Interactions.

Authors:  Seymour de Picciotto; Paige M Dickson; Michael W Traxlmayr; Bryan S Marques; Elke Socher; Sixing Zhao; Stephanie Cheung; Jonathan D Kiefer; A Joshua Wand; Linda G Griffith; Barbara Imperiali; K Dane Wittrup
Journal:  J Mol Biol       Date:  2016-07-21       Impact factor: 5.469

8.  Engineered, highly reactive substrates of microbial transglutaminase enable protein labeling within various secondary structure elements.

Authors:  Natalie M Rachel; Daniela Quaglia; Éric Lévesque; André B Charette; Joelle N Pelletier
Journal:  Protein Sci       Date:  2017-11       Impact factor: 6.725

Review 9.  Multiply labeling proteins for studies of folding and stability.

Authors:  Conor M Haney; Rebecca F Wissner; E James Petersson
Journal:  Curr Opin Chem Biol       Date:  2015-08-04       Impact factor: 8.822

10.  Assessing histidine tags for recruiting deoxyribozymes to catalyze peptide and protein modification reactions.

Authors:  Chih-Chi Chu; Scott K Silverman
Journal:  Org Biomol Chem       Date:  2016-05-18       Impact factor: 3.876

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