Literature DB >> 26537445

Evaluation of the Biofire FilmArray BioThreat-E Test (v2.5) for Rapid Identification of Ebola Virus Disease in Heat-Treated Blood Samples Obtained in Sierra Leone and the United Kingdom.

Simon A Weller1, Daniel Bailey2, Steven Matthews3, Sarah Lumley2, Angela Sweed2, Derren Ready4, Gary Eltringham5, Jade Richards6, Richard Vipond2, Roman Lukaszewski7, Phillippa M Payne7, Emma Aarons2, Andrew J Simpson2, Emma J Hutley3, Tim Brooks2.   

Abstract

Rapid Ebola virus (EBOV) detection is crucial for appropriate patient management and care. The performance of the FilmArray BioThreat-E test (v2.5) using whole-blood samples was evaluated in Sierra Leone and the United Kingdom and was compared with results generated by a real-time Ebola Zaire PCR reference method. Samples were tested in diagnostic laboratories upon availability, included successive samples from individual patients, and were heat treated to facilitate EBOV inactivation prior to PCR. The BioThreat-E test had a sensitivity of 84% (confidence interval [CI], 64% to 95%) and a specificity of 89% (CI, 73% to 97%) in Sierra Leone (n = 60; 44 patients) and a sensitivity of 75% (CI, 19% to 99%) and a specificity of 100% (CI, 97% to 100%) in the United Kingdom (n = 108; 70 patients) compared to the reference real-time PCR. Statistical analysis (Fisher's exact test) indicated there was no significant difference between the methods at the 99% confidence level in either country. In 9 discrepant results (5 real-time PCR positives and BioThreat-E test negatives and 4 real-time PCR negatives and BioThreat-E test positives), the majority (n = 8) were obtained from samples with an observed or probable low viral load. The FilmArray BioThreat-E test (v2.5) therefore provides an attractive option for laboratories (either in austere field settings or in countries with an advanced technological infrastructure) which do not routinely offer an EBOV diagnostic capability. © Crown copyright 2015.

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Year:  2015        PMID: 26537445      PMCID: PMC4702715          DOI: 10.1128/JCM.02287-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  13 in total

1.  Purification and characterization of PCR-inhibitory components in blood cells.

Authors:  W A Al-Soud; P Rådström
Journal:  J Clin Microbiol       Date:  2001-02       Impact factor: 5.948

2.  An internally controlled, one-step, real-time RT-PCR assay for norovirus detection and genogrouping.

Authors:  K J Rolfe; S Parmar; D Mururi; T G Wreghitt; H Jalal; H Zhang; M D Curran
Journal:  J Clin Virol       Date:  2007-06-28       Impact factor: 3.168

3.  Reliable genotyping of samples with very low DNA quantities using PCR.

Authors:  P Taberlet; S Griffin; B Goossens; S Questiau; V Manceau; N Escaravage; L P Waits; J Bouvet
Journal:  Nucleic Acids Res       Date:  1996-08-15       Impact factor: 16.971

4.  Evaluation of a point-of-care blood test for identification of Ebola virus disease at Ebola holding units, Western Area, Sierra Leone, January to February 2015.

Authors:  N F Walker; C S Brown; D Youkee; P Baker; N Williams; A Kalawa; K Russell; A F Samba; N Bentley; F Koroma; M B King; B E Parker; M Thompson; T Boyles; B Healey; B Kargbo; D Bash-Taqi; A J Simpson; A Kamara; T B Kamara; M Lado; O Johnson; T Brooks
Journal:  Euro Surveill       Date:  2015-03-26

5.  Comprehensive panel of real-time TaqMan polymerase chain reaction assays for detection and absolute quantification of filoviruses, arenaviruses, and New World hantaviruses.

Authors:  Adrienne R Trombley; Leslie Wachter; Jeffrey Garrison; Valerie A Buckley-Beason; Jordan Jahrling; Lisa E Hensley; Randal J Schoepp; David A Norwood; Augustine Goba; Joseph N Fair; David A Kulesh
Journal:  Am J Trop Med Hyg       Date:  2010-05       Impact factor: 2.345

6.  Cross-institute evaluations of inhibitor-resistant PCR reagents for direct testing of aerosol and blood samples containing biological warfare agent DNA.

Authors:  Timothy D Minogue; Phillip A Rachwal; Adrienne Trombley Hall; Jeffery W Koehler; Simon A Weller
Journal:  Appl Environ Microbiol       Date:  2013-12-13       Impact factor: 4.792

7.  Evaluation of two multiplex real-time PCR screening capabilities for the detection of Bacillus anthracis, Francisella tularensis and Yersinia pestis in blood samples generated from murine infection models.

Authors:  Simon A Weller; Victoria Cox; Angela Essex-Lopresti; Margaret G Hartley; Tanya M Parsons; Phillip A Rachwal; Helen L Stapleton; Roman A Lukaszewski
Journal:  J Med Microbiol       Date:  2012-08-16       Impact factor: 2.472

8.  Identification of essential outstanding questions for an adequate European laboratory response to Ebolavirus Zaire West Africa 2014.

Authors:  Chantal Reusken; Matthias Niedrig; Suzan Pas; Pedro Anda; Sylvain Baize; Remi Charrel; Antonino Di Caro; Christian Drosten; Maria Dolores Fernandez-Garcia; Leticia Franco; Stephan Gunther; Isabelle Leparc-Goffart; Byron Martina; Delphine Pannetier; Anna Papa; Maria Paz Sanchez-Seco; Olli Vapalahti; Marion Koopmans
Journal:  J Clin Virol       Date:  2015-01       Impact factor: 3.168

9.  Rapid diagnosis of Ebola hemorrhagic fever by reverse transcription-PCR in an outbreak setting and assessment of patient viral load as a predictor of outcome.

Authors:  Jonathan S Towner; Pierre E Rollin; Daniel G Bausch; Anthony Sanchez; Sharon M Crary; Martin Vincent; William F Lee; Christina F Spiropoulou; Thomas G Ksiazek; Mathew Lukwiya; Felix Kaducu; Robert Downing; Stuart T Nichol
Journal:  J Virol       Date:  2004-04       Impact factor: 5.103

10.  FilmArray, an automated nested multiplex PCR system for multi-pathogen detection: development and application to respiratory tract infection.

Authors:  Mark A Poritz; Anne J Blaschke; Carrie L Byington; Lindsay Meyers; Kody Nilsson; David E Jones; Stephanie A Thatcher; Thomas Robbins; Beth Lingenfelter; Elizabeth Amiott; Amy Herbener; Judy Daly; Steven F Dobrowolski; David H-F Teng; Kirk M Ririe
Journal:  PLoS One       Date:  2011-10-19       Impact factor: 3.240

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  17 in total

Review 1.  Reducing Uncertainty for Acute Febrile Illness in Resource-Limited Settings: The Current Diagnostic Landscape.

Authors:  Matthew L Robinson; Yukari C Manabe
Journal:  Am J Trop Med Hyg       Date:  2017-06       Impact factor: 2.345

2.  Rapid, Safe, and Simple Manual Bedside Nucleic Acid Extraction for the Detection of Virus in Whole Blood Samples.

Authors:  Maiken W Rosenstierne; Christopher E Jensen; Anders Fomsgaard
Journal:  J Vis Exp       Date:  2018-06-30       Impact factor: 1.355

3.  Development, Evaluation, and Integration of a Quantitative Reverse-Transcription Polymerase Chain Reaction Diagnostic Test for Ebola Virus on a Molecular Diagnostics Platform.

Authors:  Lieselotte Cnops; Peter Van den Eede; James Pettitt; Leo Heyndrickx; Birgit De Smet; Sandra Coppens; Ilse Andries; Theresa Pattery; Luc Van Hove; Geert Meersseman; Sari Van Den Herrewegen; Nicolas Vergauwe; Rein Thijs; Peter B Jahrling; David Nauwelaers; Kevin K Ariën
Journal:  J Infect Dis       Date:  2016-05-30       Impact factor: 5.226

Review 4.  Diagnosis of Ebola Virus Disease: Past, Present, and Future.

Authors:  M Jana Broadhurst; Tim J G Brooks; Nira R Pollock
Journal:  Clin Microbiol Rev       Date:  2016-10       Impact factor: 26.132

Review 5.  Case study: design and implementation of training for scientists deploying to Ebola diagnostic field laboratories in Sierra Leone: October 2014 to February 2016.

Authors:  Christopher H Logue; Suzanna M Lewis; Amber Lansley; Sara Fraser; Clare Shieber; Sonal Shah; Amanda Semper; Daniel Bailey; Jason Busuttil; Liz Evans; Miles W Carroll; Nigel J Silman; Tim Brooks; Jane A Shallcross
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-05-26       Impact factor: 6.237

6.  Clinical evaluation of the BioFire Global Fever Panel for the identification of malaria, leptospirosis, chikungunya, and dengue from whole blood: a prospective, multicentre, cross-sectional diagnostic accuracy study.

Authors:  Yukari C Manabe; Joshua Betz; Olivia Jackson; Victor Asoala; Isabel Bazan; Paul W Blair; Aileen Chang; Sarunyou Chusri; John A Crump; Kimberly A Edgel; Dennis J Faix; Stefan Fernandez; Anne T Fox; Jose A Garcia; Max Grogl; Erin A Hansen; Vireak Heang; Stacey L House; Krisada Jongsakul; Michael B Kaburise; Chonticha Klungthong; Mohammed Lamorde; Andrew G Letizia; Ivette Lorenzana; Malen Luy; Vanance P Maro; Christopher N Mores; Christopher A Myers; Abraham R Oduro; Leda Parham; Abigail J Porzucek; Michael Prouty; David S Rabiger; Matthew P Rubach; Crystyan Siles; Maria Silva; Chinaka Ukachu; John N Waitumbi; Cynthia L Phillips; Brian W Jones
Journal:  Lancet Infect Dis       Date:  2022-06-15       Impact factor: 71.421

Review 7.  Rapid diagnostic tests versus RT-PCR for Ebola virus infections: a systematic review and meta-analysis.

Authors:  Basilua Andre Muzembo; Kei Kitahara; Ayumu Ohno; Ngangu Patrick Ntontolo; Nlandu Roger Ngatu; Keinosuke Okamoto; Shin-Ichi Miyoshi
Journal:  Bull World Health Organ       Date:  2022-06-01       Impact factor: 13.831

8.  Analysis of circulating non-coding RNAs in a non-invasive and cost-effective manner.

Authors:  Yu-Min Wang; Michael Patrick Trinh; Yongzan Zheng; Kaizhu Guo; Luis A Jimenez; Wenwan Zhong
Journal:  Trends Analyt Chem       Date:  2019-07-05       Impact factor: 12.296

Review 9.  Point-of-Care Diagnostics: Recent Developments in a Connected Age.

Authors:  Samiksha Nayak; Nicole R Blumenfeld; Tassaneewan Laksanasopin; Samuel K Sia
Journal:  Anal Chem       Date:  2016-12-13       Impact factor: 6.986

10.  Performance of the GeneXpert Ebola Assay for Diagnosis of Ebola Virus Disease in Sierra Leone: A Field Evaluation Study.

Authors:  Amanda E Semper; M Jana Broadhurst; Jade Richards; Geraldine M Foster; Andrew J H Simpson; Christopher H Logue; J Daniel Kelly; Ann Miller; Tim J G Brooks; Megan Murray; Nira R Pollock
Journal:  PLoS Med       Date:  2016-03-29       Impact factor: 11.069

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