Literature DB >> 26536272

Lack of Dependence of the Sizes of the Mesoscopic Protein Clusters on Electrostatics.

Maria A Vorontsova1, Ho Yin Chan2, Vassiliy Lubchenko3, Peter G Vekilov4.   

Abstract

Protein-rich clusters of steady submicron size and narrow size distribution exist in protein solutions in apparent violation of the classical laws of phase equilibrium. Even though they contain a minor fraction of the total protein, evidence suggests that they may serve as essential precursors for the nucleation of ordered solids such as crystals, sickle-cell hemoglobin polymers, and amyloid fibrils. The cluster formation mechanism remains elusive. We use the highly basic protein lysozyme at nearly neutral and lower pH as a model and explore the response of the cluster population to the electrostatic forces, which govern numerous biophysical phenomena, including crystallization and fibrillization. We tune the strength of intermolecular electrostatic forces by varying the solution ionic strength I and pH and find that despite the weaker repulsion at higher I and pH, the cluster size remains constant. Cluster responses to the presence of urea and ethanol demonstrate that cluster formation is controlled by hydrophobic interactions between the peptide backbones, exposed to the solvent after partial protein unfolding that may lead to transient protein oligomers. These findings reveal that the mechanism of the mesoscopic clusters is fundamentally different from those underlying the two main classes of ordered protein solid phases, crystals and amyloid fibrils, and partial unfolding of the protein chain may play a significant role.
Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26536272      PMCID: PMC4643268          DOI: 10.1016/j.bpj.2015.09.025

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  58 in total

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4.  Anatomy of energetic changes accompanying urea-induced protein denaturation.

Authors:  Matthew Auton; Luis Marcelo F Holthauzen; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

5.  An electrostatic network and long-range regulation of Src kinases.

Authors:  Elif Ozkirimli; Shalini S Yadav; W Todd Miller; Carol Beth Post
Journal:  Protein Sci       Date:  2008-08-07       Impact factor: 6.725

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7.  The use of dynamic light scattering and brownian microscopy to characterize protein aggregation.

Authors:  Ye Li; Vassiliy Lubchenko; Peter G Vekilov
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8.  Ostwald-like ripening of the anomalous mesoscopic clusters in protein solutions.

Authors:  Ye Li; Vassiliy Lubchenko; Maria A Vorontsova; Luis Filobelo; Peter G Vekilov
Journal:  J Phys Chem B       Date:  2012-08-27       Impact factor: 2.991

9.  An electrostatic steering mechanism of Cdc42 recognition by Wiskott-Aldrich syndrome proteins.

Authors:  Lars Hemsath; Radovan Dvorsky; Dennis Fiegen; Marie-France Carlier; Mohammad Reza Ahmadian
Journal:  Mol Cell       Date:  2005-10-28       Impact factor: 17.970

10.  Effect of alcohols on protein hydration: crystallographic analysis of hen egg-white lysozyme in the presence of alcohols.

Authors:  Ashlesha Deshpande; Sagar Nimsadkar; Shekhar C Mande
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-06-24
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  9 in total

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3.  Tuning crystallization pathways through sequence engineering of biomimetic polymers.

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Journal:  Nat Mater       Date:  2017-04-17       Impact factor: 43.841

4.  Dynamics of liquid-liquid phase separation of wheat gliadins.

Authors:  Adeline Boire; Christian Sanchez; Marie-Hélène Morel; Minne Paul Lettinga; Paul Menut
Journal:  Sci Rep       Date:  2018-09-27       Impact factor: 4.379

5.  Anomalous Dense Liquid Condensates Host the Nucleation of Tumor Suppressor p53 Fibrils.

Authors:  Mohammad S Safari; Zhiqing Wang; Kunaal Tailor; Anatoly B Kolomeisky; Jacinta C Conrad; Peter G Vekilov
Journal:  iScience       Date:  2019-01-24

6.  Effects of Protein Unfolding on Aggregation and Gelation in Lysozyme Solutions.

Authors:  Shakiba Nikfarjam; Elena V Jouravleva; Mikhail A Anisimov; Taylor J Woehl
Journal:  Biomolecules       Date:  2020-09-02

7.  Formation and stabilization mechanism of mesoscale clusters in solution.

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8.  Phase-separating RNA-binding proteins form heterogeneous distributions of clusters in subsaturated solutions.

Authors:  Mrityunjoy Kar; Furqan Dar; Timothy J Welsh; Laura T Vogel; Ralf Kühnemuth; Anupa Majumdar; Georg Krainer; Titus M Franzmann; Simon Alberti; Claus A M Seidel; Tuomas P J Knowles; Anthony A Hyman; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-05       Impact factor: 12.779

9.  Nucleation of glucose isomerase protein crystals in a nonclassical disguise: The role of crystalline precursors.

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-15       Impact factor: 11.205

  9 in total

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