Literature DB >> 26526851

Dynamic Short Hydrogen Bonds in Histidine Tetrad of Full-Length M2 Proton Channel Reveal Tetrameric Structural Heterogeneity and Functional Mechanism.

Yimin Miao1, Riqiang Fu2, Huan-Xiang Zhou3, Timothy A Cross4.   

Abstract

The tetrameric M2 protein from influenza A conducts protons into the virus upon acid activation of its His37 tetrad and is a proven drug target. Here, in studies of full-length M2 protein solubilized in native-like liquid-crystalline lipid bilayers, a pH titration monitored by solid-state nuclear magnetic resonance revealed a clustering of the first three His37 pKas (6.3, 6.3, and 5.5). When the +2 state of the tetrad accepts a third proton from the externally exposed portion of the channel pore and releases a proton to the internally exposed pore, successful proton conductance is achieved, but more frequently the tetrad accepts and returns the proton to the externally exposed pore, resulting in a futile cycle. Both dynamics and conformational heterogeneity of the His37 tetrad featuring short hydrogen bonds between imidazolium-imidazole pairs are characterized, and the heterogeneity appears to reflect oligomeric helix packing and the extent of transmembrane helical bending around Gly34.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26526851      PMCID: PMC4670578          DOI: 10.1016/j.str.2015.09.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  44 in total

1.  Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity.

Authors:  Jun Hu; Riqiang Fu; Katsuyuki Nishimura; Li Zhang; Huan-Xiang Zhou; David D Busath; Viksita Vijayvergiya; Timothy A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

2.  Conformational analysis of the full-length M2 protein of the influenza A virus using solid-state NMR.

Authors:  Shu Yu Liao; Keith J Fritzsching; Mei Hong
Journal:  Protein Sci       Date:  2013-10-07       Impact factor: 6.725

3.  Using low-E resonators to reduce RF heating in biological samples for static solid-state NMR up to 900 MHz.

Authors:  Peter L Gor'kov; Eduard Y Chekmenev; Conggang Li; Myriam Cotten; Jarrod J Buffy; Nathaniel J Traaseth; Gianluigi Veglia; William W Brey
Journal:  J Magn Reson       Date:  2006-12-14       Impact factor: 2.229

4.  The influenza m2 cytoplasmic tail changes the proton-exchange equilibria and the backbone conformation of the transmembrane histidine residue to facilitate proton conduction.

Authors:  Shu Y Liao; Yu Yang; Daniel Tietze; Mei Hong
Journal:  J Am Chem Soc       Date:  2015-04-30       Impact factor: 15.419

5.  Membrane-dependent effects of a cytoplasmic helix on the structure and drug binding of the influenza virus M2 protein.

Authors:  Sarah Cady; Tuo Wang; Mei Hong
Journal:  J Am Chem Soc       Date:  2011-07-07       Impact factor: 15.419

6.  Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel.

Authors:  Rafal M Pielak; James J Chou
Journal:  Biochem Biophys Res Commun       Date:  2010-09-15       Impact factor: 3.575

7.  NMR detection of pH-dependent histidine-water proton exchange reveals the conduction mechanism of a transmembrane proton channel.

Authors:  Fanghao Hu; Klaus Schmidt-Rohr; Mei Hong
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

8.  Magic angle spinning NMR investigation of influenza A M2(18-60): support for an allosteric mechanism of inhibition.

Authors:  Loren B Andreas; Matthew T Eddy; Rafal M Pielak; James Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2010-08-18       Impact factor: 15.419

Review 9.  Influences of membrane mimetic environments on membrane protein structures.

Authors:  Huan-Xiang Zhou; Timothy A Cross
Journal:  Annu Rev Biophys       Date:  2013-03-01       Impact factor: 12.981

10.  Ab initio calculations and validation of the pH-dependent structures of the His37-Trp41 quartet, the heart of acid activation and proton conductance in the M2 protein of Influenza A virus.

Authors:  Hao Dong; Myunggi Yi; Timothy A Cross; Huan-Xiang Zhou
Journal:  Chem Sci       Date:  2013-07-01       Impact factor: 9.825

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  24 in total

Review 1.  Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy.

Authors:  Akira Naito; Nobuaki Matsumori; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-06-06       Impact factor: 3.770

2.  Beyond Structural Biology to Functional Biology: Solid-State NMR Experiments and Strategies for Understanding the M2 Proton Channel Conductance.

Authors:  Huajun Qin; Yimin Miao; Timothy A Cross; Riqiang Fu
Journal:  J Phys Chem B       Date:  2017-05-02       Impact factor: 2.991

3.  X-ray Crystal Structure of the Influenza A M2 Proton Channel S31N Mutant in Two Conformational States: An Open and Shut Case.

Authors:  Jessica L Thomaston; Yibing Wu; Nicholas Polizzi; Lijun Liu; Jun Wang; William F DeGrado
Journal:  J Am Chem Soc       Date:  2019-07-11       Impact factor: 15.419

Review 4.  Structure and Dynamics of Membrane Proteins from Solid-State NMR.

Authors:  Venkata S Mandala; Jonathan K Williams; Mei Hong
Journal:  Annu Rev Biophys       Date:  2018-03-02       Impact factor: 12.981

5.  XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.

Authors:  Jessica L Thomaston; Rahel A Woldeyes; Takanori Nakane; Ayumi Yamashita; Tomoyuki Tanaka; Kotaro Koiwai; Aaron S Brewster; Benjamin A Barad; Yujie Chen; Thomas Lemmin; Monarin Uervirojnangkoorn; Toshi Arima; Jun Kobayashi; Tetsuya Masuda; Mamoru Suzuki; Michihiro Sugahara; Nicholas K Sauter; Rie Tanaka; Osamu Nureki; Kensuke Tono; Yasumasa Joti; Eriko Nango; So Iwata; Fumiaki Yumoto; James S Fraser; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-23       Impact factor: 11.205

Review 6.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Authors:  Huan-Xiang Zhou; Xiaodong Pang
Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

7.  Structural Basis for Asymmetric Conductance of the Influenza M2 Proton Channel Investigated by Solid-State NMR Spectroscopy.

Authors:  Venkata S Mandala; Shu-Yu Liao; Byungsu Kwon; Mei Hong
Journal:  J Mol Biol       Date:  2017-05-20       Impact factor: 5.469

8.  Acid activation mechanism of the influenza A M2 proton channel.

Authors:  Ruibin Liang; Jessica M J Swanson; Jesper J Madsen; Mei Hong; William F DeGrado; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

9.  M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus.

Authors:  Hedieh Torabifard; Afra Panahi; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-03       Impact factor: 11.205

10.  Probing Hydronium Ion Histidine NH Exchange Rate Constants in the M2 Channel via Indirect Observation of Dipolar-Dephased 15N Signals in Magic-Angle-Spinning NMR.

Authors:  Riqiang Fu; Yimin Miao; Huajun Qin; Timothy A Cross
Journal:  J Am Chem Soc       Date:  2016-12-01       Impact factor: 15.419

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